Jatropha Genome Database

JcCB0083591.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0083591.10 + phase: 0 
         (483 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011152 replication factor C / DNA polymerase III gamma-ta...   549   e-156

>30190.m011152 replication factor C / DNA polymerase III gamma-tau
            subunit, putative
          Length = 1002

 Score =  549 bits (277), Expect = e-156
 Identities = 397/437 (90%)
 Strand = Plus / Plus

                                                                        
Query: 47   aggttccatatgttcctgaaggccttgaagctattatattcactgctgatggagatatga 106
            ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 566  aggttccatatgttcctgagggccttgaagctatcatattcactgctgatggagatatga 625

                                                                        
Query: 107  ggcaagctttgaataacttgcaagctactcacagtggattccggtttgtcaaccaggaaa 166
            |||| || ||||||||||||||||||||  | |||||||| |||||||||||||||||||
Sbjct: 626  ggcaggcattgaataacttgcaagctacgtatagtggatttcggtttgtcaaccaggaaa 685

                                                                        
Query: 167  atgttttcaaggtctgtgatcagcctcacccattgcatgtgaagaatatggttcgccagg 226
            ||||||||||||| ||||| |||||||| ||||||||||| ||||| ||||||||||| |
Sbjct: 686  atgttttcaaggtttgtgaccagcctcatccattgcatgtaaagaacatggttcgccatg 745

                                                                        
Query: 227  tgattgagggaaaatttgatgatgcttgttctggtctaaaacagctgtatgatttgggct 286
            |||| |||||||| | ||||||||||||||||||||| || ||||| ||||| |||||||
Sbjct: 746  tgatggagggaaagtatgatgatgcttgttctggtctgaagcagctttatgacttgggct 805

                                                                        
Query: 287  attctcccactgatataattacaaccctttttcgtatcataaagaattatgacatggctg 346
            |||| || ||||| ||||| ||||||||||| ||||| |||||||||||||| ||||| |
Sbjct: 806  attcccctactgacataatcacaacccttttccgtattataaagaattatgatatggcgg 865

                                                                        
Query: 347  aatatttgaaattggagttcatgaaggaaactgggtttgcccatatgagaatctgtgatg 406
            ||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 866  aatatctgaaattggaattcatgaaggaaactggatttgcccatatgagaatctgtgatg 925

                                                                        
Query: 407  gtgtaggttcctatcttcagctgtgtggccttttggctaagcttgccctagttcgcgaaa 466
            | |||||||||||||||||||| ||||||||||| ||||||||||| |||||||| || |
Sbjct: 926  gggtaggttcctatcttcagctatgtggccttttagctaagcttgcgctagttcgtgaca 985

                             
Query: 467  cagccaaagcatcataa 483
            |||||| |||| |||||
Sbjct: 986  cagccagagcagcataa 1002