Jatropha Genome Database

JcCB0080851.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0080851.20 - phase: 1 /partial
         (350 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28256.m000141 Shikimate kinase, chloroplast precursor, putative       264   3e-70
28644.m000929 Shikimate kinase, chloroplast precursor, putative        52   2e-06

>28256.m000141 Shikimate kinase, chloroplast precursor, putative
          Length = 942

 Score =  264 bits (133), Expect = 3e-70
 Identities = 232/265 (87%)
 Strand = Plus / Plus

                                                                       
Query: 3   tcagtattggaatctggaagtttgcctgtttcttctgatgaatctcttatcttgaagcat 62
           ||||| ||||||||||||||| | | || |||||||||||||||||| || |||||| ||
Sbjct: 226 tcagttttggaatctggaagtcttcatgcttcttctgatgaatctctgattttgaagaat 285

                                                                       
Query: 63  aaatcacaagaggttgggccctatatcaatggacgctgtatataccttgtaggaatgatg 122
           |||||||||| ||||| ||||||| | | ||||||||||||||| ||||| |||||||||
Sbjct: 286 aaatcacaagtggttgagccctatttaagtggacgctgtatatatcttgttggaatgatg 345

                                                                       
Query: 123 ggctctggaaaaacgactgtgggcaaggttctttcacaagtacttgcttattcattctgt 182
           |||||||||||||| ||||| ||||||||||| |||||||| ||||  ||||||||||||
Sbjct: 346 ggctctggaaaaactactgtcggcaaggttctctcacaagtgcttggatattcattctgt 405

                                                                       
Query: 183 gactgtgacacattgattgaggaggaagttcaaggaatttcggtagctgaaatctttaag 242
           ||||||||| | ||||| ||| |||| ||  | |||| ||| ||||||||||||||||||
Sbjct: 406 gactgtgactcgttgatagagcaggatgtggatggaacttcagtagctgaaatctttaag 465

                                    
Query: 243 ctctatggagagggctacttcagaa 267
           || ||||||||||||| ||||||||
Sbjct: 466 ctttatggagagggcttcttcagaa 490


>28644.m000929 Shikimate kinase, chloroplast precursor, putative
          Length = 849

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 108 cttgtaggaatgatgggctctggaaaaacgactgtgggcaag 149
           ||||| |||||||||||||||||||| || || |||||||||
Sbjct: 319 cttgttggaatgatgggctctggaaagactacagtgggcaag 360