Jatropha Genome Database

JcCB0080001.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0080001.10 - phase: 0 
         (912 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m013898 hypothetical protein                                    299   2e-80
29844.m003362 conserved hypothetical protein                           64   2e-09

>30170.m013898 hypothetical protein
          Length = 630

 Score =  299 bits (151), Expect = 2e-80
 Identities = 299/348 (85%), Gaps = 9/348 (2%)
 Strand = Plus / Plus

                                                                       
Query: 564 atttgaagtaagtcatatattaaaaaggtatgtgagaaaggttaggccattattgttctt 623
           |||||||||||||||  || ||||||| ||||| || | |||||||||||||||||||||
Sbjct: 291 atttgaagtaagtcaagtactaaaaagatatgtcaggatggttaggccattattgttctt 350

                                                                       
Query: 624 taaaggaagaagagaagatcaccatcttcaattgcataggcaatcccattcattttcagg 683
            |||||||| |||||| | | |||      ||| ||||||||| || |||||||||||||
Sbjct: 351 caaaggaaggagagaaaagctcca------attccataggcaaccctattcattttcagg 404

                                                                       
Query: 684 taatttaagcttgagaaataaactggagttgggtagaggaagaagaggagaatactctgc 743
            |||||||||| || |||||| |  || ||| |   ||||||||||||||||||||||||
Sbjct: 405 caatttaagctggaaaaataagcaagaattgcg---aggaagaagaggagaatactctgc 461

                                                                       
Query: 744 tcctgcttccatgagaacatctccaacaaatagtggccttcttgtagcaacagcgacact 803
            || ||||||||||||||||||||||| || |||||||||||||||||||| ||  |  |
Sbjct: 462 accagcttccatgagaacatctccaactaacagtggccttcttgtagcaactgcatccat 521

                                                                       
Query: 804 tccttcttccactagtgatagcactatggaggaattgcaggctgcaattcaagcagcaat 863
            |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 522 accttcttctactagcgatagtactatggaggaattgcaggctgcaattcaagcagcaat 581

                                                           
Query: 864 tgctcactgcaagaactccattgctgctgaagacaagatcaaatgcta 911
           ||||||||||||||| || ||||| |||||||| ||||||||||||||
Sbjct: 582 tgctcactgcaagaattctattgccgctgaagagaagatcaaatgcta 629


>29844.m003362 conserved hypothetical protein
          Length = 1053

 Score = 63.9 bits (32), Expect = 2e-09
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                    
Query: 829  atggaggaattgcaggctgcaattcaagcagcaattgctcactgcaagaactccat 884
            |||||||||||||||  ||| |||||||  ||||||||||| ||||||||||||||
Sbjct: 961  atggaggaattgcagagtgctattcaaggtgcaattgctcattgcaagaactccat 1016