Jatropha Genome Database
- JcCB0075281.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0075281.20 - phase: 0 /TE/partial
(1905 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
27758.m000324 dead box ATP-dependent RNA helicase, putative 2179 0.0
29748.m000379 dead box ATP-dependent RNA helicase, putative 66 8e-10
30074.m001375 dead box ATP-dependent RNA helicase, putative 60 5e-08
28320.m001110 dead box ATP-dependent RNA helicase, putative 54 3e-06
>27758.m000324 dead box ATP-dependent RNA helicase, putative
Length = 3522
Score = 2179 bits (1099), Expect = 0.0
Identities = 1703/1907 (89%), Gaps = 18/1907 (0%)
Strand = Plus / Plus
Query: 10 agtaaaattttggacactataaagaagctcaactatgataagccaatgccaattcaagca 69
|||||||||||||| || || |||||||| || ||||| ||||| |||||||| |||||
Sbjct: 1606 agtaaaattttggagacaattaagaagcttaattatgagaagcctatgccaatacaagct 1665
Query: 70 caggcactgcctatagttatgagcggcagagattgtataggcattgccaagactggctct 129
||||||||||| ||| | ||||| |||||||| || ||||| ||||| || |||||||||
Sbjct: 1666 caggcactgcccataataatgagtggcagagactgcatagggattgcaaaaactggctct 1725
Query: 130 ggaaaaactcttgcgtttgtactgccaatgctgaggcatatcaaggaccagccacctgtg 189
|| ||||| ||||| ||||| ||||| |||||||||||||||||||||||||||| ||||
Sbjct: 1726 ggcaaaacccttgcatttgtgctgcctatgctgaggcatatcaaggaccagccacttgtg 1785
Query: 190 gaagctggagatgggccgattgggcttataatggcacctactagggagcttgttcaacaa 249
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1786 gaagctggagatggaccgattgggcttataatggcacctacaagggagcttgttcaacag 1845
Query: 250 atccacagtgatataaaaaagtttgccaaggttttgggaattagatgtgtgcctgtatat 309
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1846 atccacagtgatataaagaagtttgccaaggtactgggaattagatgtgtgcctgtatat 1905
Query: 310 ggaggttctggtgttgctcaacaaatcagtgaattaaagcggggtactgagattgttgtc 369
||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 1906 ggaggttctggcgttgctcaacagatcagtgaattaaagcggggaactgagattgttgtc 1965
Query: 370 tgtactccaggtaggatgattgacatattatgcacaagtgggggcaaaattacaaatctg 429
||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||
Sbjct: 1966 tgtactccaggtaggatgattgacatactttgcacaagtggggggaaaattacaaatctt 2025
Query: 430 cgtagagtcacttatctagttatggatgaagctgatcggatgtttgatatgggctttgaa 489
||||||||||| ||| | |||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 2026 cgtagagtcacatatttggttatggatgaagctgatcgtatgtttgacatgggctttgaa 2085
Query: 490 cctcaaatcactcgaattgtccaaaatattcgcccagatcgtcaaactgtactcttttct 549
||||| ||||| ||||||| ||||| ||||||||||||||||||||||| || ||||||
Sbjct: 2086 cctcagatcaccagaattgttcaaaacattcgcccagatcgtcaaactgtgctgttttct 2145
Query: 550 gctactttccctcgtcaggttgagattttggcccgtaaggtattgaacaaacctgtggaa 609
|| ||||||||||| ||||||||||||||||| ||||| || || ||||||||||||||
Sbjct: 2146 gccactttccctcggcaggttgagattttggctcgtaaagtgttaaacaaacctgtggag 2205
Query: 610 atccaggttggtggaaggagtgtggtgaacaaggacataactcagttagttgaggtaagg 669
|||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 2206 atccaggtgggtgggaggagtgtggtgaacaaggacattactcaattagttgaggtaagg 2265
Query: 670 ccagaaaatgaaagattcttgagactgttagaactacttggtgaatggtatgagaaagga 729
|| |||| |||||| ||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 2266 cctgaaagtgaaaggttcttgagactgttagaactacttggtgagtggaatgagaaagga 2325
Query: 730 aaaattttgatattcgtccagtcacaggacaaatgtgatgctttgtttagggatttactc 789
|||||||||||||||||||| |||||||| ||||| |||||| |||||||||| || ||
Sbjct: 2326 aaaattttgatattcgtccaatcacaggataaatgcgatgctctgtttagggacttgctt 2385
Query: 790 aagcatggttatccttgcctttcacttcatggggctaaggatcagacagaccgtgagtct 849
|||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2386 aagcatggctatccatgcctttcacttcatggggctaaggatcaaacagaccgtgagtct 2445
Query: 850 accatttctgatttcaagagcaatgtctgcaatttattgattgccacaagtattgcagcc 909
|||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct: 2446 accatttcagatttcaagagcaatgtctgcaatttgttgattgccacgagtattgctgcc 2505
Query: 910 agaggtttagatgtgaaagagcttgaactggtgatcaattttgatgttccaaatcactat 969
||||||||||||||||| |||||||| |||||| ||||||||||||||||||| || |||
Sbjct: 2506 agaggtttagatgtgaaggagcttgatctggtggtcaattttgatgttccaaaccattat 2565
Query: 970 gaggattatgtgcaccgtgttggacgaacgggccgagctggtcgcaaaggctgtgccatc 1029
||||||||||| ||||||||||| ||||||||| ||||||| |||||||| ||||| |||
Sbjct: 2566 gaggattatgttcaccgtgttggtcgaacgggcagagctggccgcaaaggttgtgcaatc 2625
Query: 1030 acatttatttctgaggaggatgcaagatacgcaccagatcttgcaaaagcattggaactc 1089
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 2626 acatttatttctgaggaggatgcaagatatgcaccagatcttgtaaaagcattggaactc 2685
Query: 1090 tctgagcaagttgttcccgacgaccttaaagctcttgctgatgggtttatggcaaaagtg 1149
|| |||||||||||||| || ||||| ||||||||||||||||| ||||||| |||||||
Sbjct: 2686 tcggagcaagttgttccagaggacctgaaagctcttgctgatggttttatggtaaaagtg 2745
Query: 1150 aaccagggccttgagcaagcccatggaactggttatggtggtagtggttttaaattcaat 1209
|||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 2746 aaccaggggcttgagcaagctcatggaactggttatggtggaagtggttttaaattcaat 2805
Query: 1210 gaagaggaggatgaaaagaggatagcagcaaagaaagcacaagcaaaagaatatggcttt 1269
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2806 gaagaggaggatgaaaagaggatagcagcaaagaaagcacaagcaaaggaatatggcttt 2865
Query: 1270 gaagaagacaagtcagattcagaagatgaagacgacggagttcgaaaagctggaggcgac 1329
|| ||||||||||||||||||||||||||||| || || |||| || || || || |||
Sbjct: 2866 gaggaagacaagtcagattcagaagatgaagatgaagggattcgtaaggcaggtggtgac 2925
Query: 1330 atctcacggc---aggctgcatttgctcaacaattatttgccattactgctgcctccaaa 1386
|| ||| ||| | ||||| ||||||| || ||| |||| ||| ||||||||||||||
Sbjct: 2926 atttcaaggcataatgctgcgcttgctcagcagttagttgcaattgctgctgcctccaaa 2985
Query: 1387 agcagtacattggcaactccacctcc---------------cttgctcccccctggtgga 1431
|||| ||||| ||||| || |||| ||||| || ||||| |||
Sbjct: 2986 agcactacatctgcaacaccgactcctatcacggctggtcaattgcttcctcctggcgga 3045
Query: 1432 cttcctgtttctctgccaagtgtcatgggcctaactattccaggtgcagcaacagctgta 1491
| ||||||||| ||||| | ||||| |||||||| |||||||| ||||| ||| |||
Sbjct: 3046 ttacctgtttctttgccaggagtcattggcctaacaattccaggcccagcagcagttgtg 3105
Query: 1492 cctggtgctggactacctgttgttggtaatgataacacagctaaggcacttgccgctgcc 1551
||||| |||||||| |||||| | ||| ||||||||||| |||||| |||| ||||||
Sbjct: 3106 cctggagctggactgcctgttatcaataacgataacacagccaaggcaattgcagctgcc 3165
Query: 1552 atcaacttgcagcataacctggcaaagattcaagctgatgcaatgccggagcattatgaa 1611
|||||||||||||||||||| |||||||||||||||||||| ||||| || |||||||||
Sbjct: 3166 atcaacttgcagcataaccttgcaaagattcaagctgatgccatgcctgaacattatgaa 3225
Query: 1612 gcagagctggagattaatgatttcccccaaaatgctcggtggaaggttacacacaaggaa 1671
|||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct: 3226 gcagagcttgagattaatgattttccacaaaatgctcggtggaaggttacccacaaggaa 3285
Query: 1672 acattgggcccaatttcagaatggactggcgctgccatcactaccaggggacagtatttc 1731
|| ||||| |||||||| || |||||||| |||||||| || |||||||| |||| |||
Sbjct: 3286 actttgggtccaatttccgactggactggtgctgccattacaaccaggggccagttcttc 3345
Query: 1732 cctccgggcaggattccagggccaggcgaacgcaagctctacttgttcattgagggccct 1791
|| || || |||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct: 3346 ccaccaggtcggattccaggaccaggggaacgcaagctgtacttgttcattgagggccct 3405
Query: 1792 agtgaaacatctgttaagaaagctaaaacagaactaaaacgtgttttggaagacatcacg 1851
||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||
Sbjct: 3406 agtgaaacatctgttaagaaagctaaagcagagcttaaacgtgttttggaagacatcaca 3465
Query: 1852 aatcaggcattatcacttcctggtggtgctcaaccagggagatactc 1898
|| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 3466 aaccaggcattatcacttcctggtggagctcaaccaggaagatactc 3512
>29748.m000379 dead box ATP-dependent RNA helicase, putative
Length = 2871
Score = 65.9 bits (33), Expect = 8e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 454 gatgaagctgatcggatgtttgatatgggctttgaacctcaaatc 498
||||| |||||||||||| |||||||||| |||||||||||||||
Sbjct: 1921 gatgaggctgatcggatgcttgatatgggttttgaacctcaaatc 1965
>30074.m001375 dead box ATP-dependent RNA helicase, putative
Length = 2145
Score = 60.0 bits (30), Expect = 5e-08
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 454 gatgaagctgatcggatgtttgatatgggctttgaacctcaa 495
||||| |||||||||||| |||||||||| ||||||||||||
Sbjct: 1351 gatgaggctgatcggatgattgatatgggttttgaacctcaa 1392
>28320.m001110 dead box ATP-dependent RNA helicase, putative
Length = 1815
Score = 54.0 bits (27), Expect = 3e-06
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 452 tggatgaagctgatcggatgtttgatatgggctttgaacctca 494
|||| ||||||||| ||||| |||||||||| |||||||||||
Sbjct: 905 tggacgaagctgataggatgcttgatatgggatttgaacctca 947