Jatropha Genome Database
- JcCB0074501.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0074501.10 + phase: 2 /partial
(811 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29742.m001383 WD-repeat protein, putative 311 4e-84
28197.m000034 WD-repeat protein, putative 54 1e-06
>29742.m001383 WD-repeat protein, putative
Length = 1827
Score = 311 bits (157), Expect = 4e-84
Identities = 295/341 (86%)
Strand = Plus / Plus
Query: 77 tgcttacagggtaagaagaagtcagcatccaagaggataactggctttcagtatttctcc 136
|||||||||||||||||||||||| ||| ||||||||||||||||||||||| || | |
Sbjct: 1096 tgcttacagggtaagaagaagtcaccattcaagaggataactggctttcagttttcccca 1155
Query: 137 agtgatccatccagattaatggtcacttctgctgattcaaaagtccgaatccttgatggt 196
||||||||| ||| | ||||||| ||||||||||||||| ||||||| ||| |||||||
Sbjct: 1156 agtgatccaaccaaactaatggttacttctgctgattcacaagtccgtatcattgatggg 1215
Query: 197 gttgatgtgatatgcaaatatcgaggcatccacaatgcaggaagccaaatatctgcattg 256
|| |||||||||||||||||||||||| | || |||||||||||||| ||||||||||
Sbjct: 1216 gtagatgtgatatgcaaatatcgaggccttcataatgcaggaagccagatatctgcatcc 1275
Query: 257 ttcacctcaggtgggacacatattatatctgcaagtgaggattctaatatatatgtctgg 316
|||||||||| |||||||||||| | || || ||||||||||| ||| | ||| |||||
Sbjct: 1276 ttcacctcagatgggacacatatagtttcagctagtgaggattccaatgtctatatctgg 1335
Query: 317 aactatgctatcaaggatggtcctgtgcctcgcgtaaagaccaattgggcatgtgagcat 376
|||||| ||| |||| | |||||||| || ||||||| || ||||||||||||||||
Sbjct: 1336 aactatattatgcaggaagtgcctgtgccccgggtaaagaacatttgggcatgtgagcat 1395
Query: 377 ttcttctcgaacaatgcatcagttgctataccttggcctgg 417
|||||||| ||||||||||| |||||||| || ||||||||
Sbjct: 1396 ttcttctcaaacaatgcatctgttgctattccatggcctgg 1436
Score = 139 bits (70), Expect = 3e-32
Identities = 184/221 (83%), Gaps = 12/221 (5%)
Strand = Plus / Plus
Query: 581 catggatttttctccgagtcattgccaaagggttctgcaacctggccagaggaaaatctt 640
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 1600 catggatttttctccgagtcattgcctaagggttctgcaacttggccagaggaaaatctt 1659
Query: 641 ccttc---ctcattaagcatgtcgcctaaaatgtttaaatcccagtacaagtttttgagg 697
||||| ||||| |||| || ||||| ||||||||||||||||||||||| |
Sbjct: 1660 ccttcaagctcatcgggcatatc------aatgtctaaatcccagtacaagtttttgaag 1713
Query: 698 acatcttaccagagcgtccatggttcacctcatgcatggaatttggcgatagtaaccgct 757
|| ||||||| | |||||||| |||||||||| ||||| ||| ||||| |||
Sbjct: 1714 ---gctatccagagcatgcatggttctcctcatgcattaggtttggtgattgtaacggct 1770
Query: 758 ggatgggatggacggatcagatggttccagaattatggatt 798
|| ||||||||||||||||||||||| || || ||||||||
Sbjct: 1771 ggctgggatggacggatcagatggtttcaaaactatggatt 1811
>28197.m000034 WD-repeat protein, putative
Length = 2145
Score = 54.0 bits (27), Expect = 1e-06
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 605 ccaaagggttctgcaacctggccagaggaaaatcttcct 643
||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 1933 ccaaaaggttctgcaacttggccagaggaaaagcttcct 1971