Jatropha Genome Database

JcCB0071481.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0071481.10 + phase: 1 /partial
         (436 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29598.m000468 Light-inducible protein CPRF-2, putative                220   5e-57

>29598.m000468 Light-inducible protein CPRF-2, putative
          Length = 1362

 Score =  220 bits (111), Expect = 5e-57
 Identities = 295/356 (82%), Gaps = 9/356 (2%)
 Strand = Plus / Plus

                                                                       
Query: 49  ctcctccgaacattccggtggattctaaggagtatcaggcgtttcttaaaagtcaactca 108
           |||||||||| ||||||| ||||||| | || || ||||| |||||||||||| ||||||
Sbjct: 362 ctcctccgaatattccggcggattctgaagattaccaggcttttcttaaaagtaaactca 421

                                                                       
Query: 109 gcttggcttgcgctgccgttgctctctcccgggcaccttttctgaaatctcaagattccc 168
             |||||||| || ||||||||||  ||||||||| ||||||||||| || |||||||  
Sbjct: 422 atttggcttgtgccgccgttgctcagtcccgggcatcttttctgaaacctgaagattcat 481

                                                                       
Query: 169 ctgctagagctgacagtggatcacaggcatcaaatacttcacaatcaggatctcatgttc 228
           ||||| |||||||||||||||  ||||| |||||||||||||||| ||||||||||| ||
Sbjct: 482 ctgctcgagctgacagtggattgcaggcttcaaatacttcacaattaggatctcatgctc 541

                                                                       
Query: 229 ---ctaaaggtgctggaaatgacttgtccaggccacaagatacggatgctaatggattgg 285
              ||||||| |||||| ||||  | |  ||  |||||||   ||| | | ||||||  |
Sbjct: 542 cttctaaaggggctggacatgatgtatttagatcacaagaggtggacgttgatggatcag 601

                                                                       
Query: 286 ttggaatccact------ctagcacgcaaaagaaatctggtgttcccatgaagtcaacta 339
           ||||||||| ||      |||||||||| ||||||||||  |||||  | ||| |||| |
Sbjct: 602 ttggaatcccctccttacctagcacgcacaagaaatctgtagttcctctaaagccaacaa 661

                                                                   
Query: 340 caagtggatcatcaagagaacagtcagaagatgatgaaaatgaaggagaaactgag 395
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 662 caagtggatcatcaagagaacagtcagacgatgatgaaaatgaaggagaaactgag 717