Jatropha Genome Database
- JcCB0068571.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0068571.10 - phase: 0
(2448 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30131.m006988 pentatricopeptide repeat-containing protein, putative 771 0.0
27660.m000082 pentatricopeptide repeat-containing protein, putative 56 1e-06
>30131.m006988 pentatricopeptide repeat-containing protein, putative
Length = 1662
Score = 771 bits (389), Expect = 0.0
Identities = 1256/1545 (81%)
Strand = Plus / Plus
Query: 85 atcgatgctcgtattgttaaaacgggtttcgatccaagcacatctcgctccaattaccag 144
|||||||| || || || |||||||||||| | |||| || ||||||||||||||||||
Sbjct: 97 atcgatgcccgaatcgtcaaaacgggtttcaacccaattacttctcgctccaattaccag 156
Query: 145 atcatggatcttgttcagactggccagttatctgaagcacgcgaactgttcgatcaaatg 204
||| ||| |||| | ||||| ||||| ||||||||||| |||||||||||||||
Sbjct: 157 gtcaaaagccttcttcaaagaggccaattatccgaagcacgcgacctgttcgatcaaatg 216
Query: 205 ccttatagaaacaccatttcatcaaacgtgatgatttcgggctacttgaaagaaggaaaa 264
||| | | ||| || | ||| ||| ||||||||| ||| ||| | ||||| | ||
Sbjct: 217 cctcacaaaaatacagtctcagtaaatatgatgattttgggttacgttaaagagcgtaat 276
Query: 265 ctctctatagctaaagaaatttttgatagcatggtggaacgtaatgctgtgacgtataca 324
|| ||||| |||| || |||||||||||||||| || |||| |||||| || | |||
Sbjct: 277 ctttctatcgctagggagctttttgatagcatggttgatcgtactgctgttacttggaca 336
Query: 325 cttttgattggcgggtactcgaagagtgatcaatttatagaagcgtttaagctttttgtt 384
|||||||||| ||||| | || ||||||||||| ||||| || |||||||| |
Sbjct: 337 attttgattggtgggtattgtcagtttgatcaatttagtgaagctttcaagcttttctct 396
Query: 385 cgcatgtgtaggagtgggacgaagcctgattatgtgacatttgtaactcttttatcagga 444
||| |||| ||| | ||||||||||||||| ||||||| ||||| || || |||
Sbjct: 397 aatatgattagggatggtaagaagcctgattatgtaacatttgccactctattgtcggga 456
Query: 445 tgcaatgaccccaaaatgataaaaggattatttcaagttcattcccatgtcgttaaattg 504
|| ||||| || |||||| |||| |||||| ||||||||| | ||||| |||||| ||
Sbjct: 457 tgtaatgatccggaaatgaccaaagaattattccaagttcatacgcatgttgttaaactg 516
Query: 505 ggacatgattcagcagttattatttgcaattcattgattgattcttactgcaaaatgcat 564
|| || | ||| || |||||||||||||||||| || |||||||||| ||||||||||||
Sbjct: 517 gggcacggttcggctgttattatttgcaattcactggttgattcttattgcaaaatgcat 576
Query: 565 tgtgtagatttagctagtcagttatataaggaaatgcctcaaagggattccgttacttat 624
| ||||||||||| || | ||| |||||||||| | ||||||| || |||||||||
Sbjct: 577 cgattagatttagctcatcggatatttaaggaaatggttgaaagggactctgttacttat 636
Query: 625 aatgcattgatcgcaggatatgcaaatgaagggtttaacaaagaagcaataaagcttttc 684
||||||||||| ||||||||| ||| ||||| || || |||| || |||| |||||||
Sbjct: 637 aatgcattgataacaggatatggaaaagaaggattgaatgaagatgcgataaggcttttc 696
Query: 685 atggagatgcgagatttgggatttgagacttcagattttactttccaagctgttttatat 744
| |||||| | ||||||| |||||| |||| |||||||| || ||||| ||| ||| |
Sbjct: 697 acccagatgcaaaatttggggtttgagccttcggattttacctttcaagcagttctatgt 756
Query: 745 gctggtattgggttggatgatatagcatttgggcaacaaatccatggttatgctgtgaag 804
||| ||||||| || ||||||||| |||||||||||| || ||||||||||| ||||||
Sbjct: 757 gcttgtattggtttagatgatataatatttgggcaacagattcatggttatgcagtgaag 816
Query: 805 accactcttatatggaatgtgtttgtggggaatgccttgcttgatttctactcaaagcat 864
| |||| | ||||| ||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 817 atgggtcttgtctggaacgtgtttgtggggaattcattgcttgatttctactcaaagcat 876
Query: 865 gattgtctagttgaagctaggaaacttttttataagatgccagaattagatggtgtttct 924
|||||| || ||| || |||||||||| |||||||||||| || ||||||||||||
Sbjct: 877 gattgtgtaaatgatgcctggaaacttttcagtaagatgccagagttggatggtgtttct 936
Query: 925 tataatatgatgatcacagcttatgcttggactggactaatcaaagaatctattaatctt 984
|||||| |||||||||| |||||| | |||| |||| | |||||||||| |||||
Sbjct: 937 tataatgtgatgatcactgcttattcatggatcggacagtaccgagaatctattgatctt 996
Query: 985 ttccggaagctacagtttacaaaatatgataggaggaatttcccttttgcaaccatgttg 1044
||||| |||| ||||| ||||||| ||| ||||||||||| ||||| || |||||||||
Sbjct: 997 ttccgcgagctgcagttcacaaaatttgaaaggaggaattttcctttcgcgaccatgttg 1056
Query: 1045 agtttagcagcaaatatgttagacttgcaaatgggccggcaactccattcccaagccatc 1104
||| | |||| |||| |||||||||||||||| | |||||| |||||||| |||||
Sbjct: 1057 agtatcgcagggaatactctagacttgcaaatgggtcagcaacttcattcccatgccatt 1116
Query: 1105 gtgaccacagctgattcagaggttcttgtagcaaatgccttggttgacatgtatgcgaaa 1164
||||| ||||||| ||| ||||| ||||||||| | || |||||||||||||| ||
Sbjct: 1117 gtgactggtgctgatttagaagttctggtagcaaattctttagttgacatgtatgctaag 1176
Query: 1165 tgtagaagacctgaggaggctgaaaggatatttgtgaaactgagcagtagatgcacggtt 1224
||| ||||| ||||| | ||||||||||||||||||||||||||||||| | |||| |||
Sbjct: 1177 tgtggaagatctgagtatgctgaaaggatatttgtgaaactgagcagtaaaagcacagtt 1236
Query: 1225 ccatggacagctatgatttctgctaacgttcaaaatggacattttgaagaaagtctaaaa 1284
|| |||||||| |||| |||||||| ||||| || |||| | |||||||| ||||||||
Sbjct: 1237 ccctggacagccttgatctctgctaatgttcagaaaggacttcttgaagaaggtctaaaa 1296
Query: 1285 ttgttcagtgagatgcgtagggataatgtaactgctgaccaggctacttttgctagcgtc 1344
|||||| ||||||||| || ||||||| |||||| || ||||||||||| || |||
Sbjct: 1297 ctgttcaatgagatgcggagaaccaatgtaagtgctgatcaagctacttttgccagtgtc 1356
Query: 1345 ttaaaggcctctgcaaatttggcttcaatttcattggggaaacagctacattcctacata 1404
|| || ||||||||||||||||||||||| |||||||||||||||||||| || ||| ||
Sbjct: 1357 ttgaaagcctctgcaaatttggcttcaatatcattggggaaacagctacactcttactta 1416
Query: 1405 atcagatcagggtttatgtcaagtatttatgccggaagtgcacttgtcgatatgtatgcc 1464
|| |||||||| ||| ||||| | | ||| | ||||||||||| || || ||||||||
Sbjct: 1417 attagatcaggtttttggtcaaatgtatattctggaagtgcactcgtggacatgtatgca 1476
Query: 1465 aaatgcggatctttaaaagatgcaattcaaattttcaaagagatgcctgaaaggaatgtg 1524
|||||||| ||| ||||||| |||||| || ||| || |||||||| | |||||||||
Sbjct: 1477 aaatgcgggtctgtaaaagaggcaattagaacttttaaggagatgccgggaaggaatgta 1536
Query: 1525 gtttcctggaatgcactgatatcagcttatgcttcaaatggggatggtgaggccactctt 1584
| || ||||||||| | || |||||||||||| ||||||||||||||| |||||||||
Sbjct: 1537 atctcttggaatgcattaatctcagcttatgctcaaaatggggatggtgaagccactctt 1596
Query: 1585 aaattatttgaggagatggttctgctaggttaccaaccagattca 1629
|||| |||||| || ||||||||| |||||| ||||||||||||
Sbjct: 1597 aaatcatttgaagaaatggttctgtcaggttatcaaccagattca 1641
>27660.m000082 pentatricopeptide repeat-containing protein, putative
Length = 1545
Score = 56.0 bits (28), Expect = 1e-06
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 1502 aagagatgcctgaaaggaatgtggtttcctggaatgcactgata 1545
|||||||||||||||||||||| |||| ||||||| |||||||
Sbjct: 947 aagagatgcctgaaaggaatgtcttttcgtggaatggactgata 990