Jatropha Genome Database

JcCB0064191.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0064191.20 + phase: 0 
         (558 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29648.m002001 conserved hypothetical protein                           94   1e-18

>29648.m002001 conserved hypothetical protein
          Length = 591

 Score = 93.7 bits (47), Expect = 1e-18
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                      
Query: 10 gatgattctttcaggaaacctggatctgtcccatttaagtgggagatccgacccggtgta 69
          ||||||||||||| |||||||||| |||| || |||||||||||||| || ||||| |||
Sbjct: 10 gatgattctttcaagaaacctggagctgttccttttaagtgggagattcggcccggcgta 69

                                 
Query: 70 cccaagatccaacaccaacaaca 92
          ||||||||||| ||||| |||||
Sbjct: 70 cccaagatccagcaccaccaaca 92



 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 152/191 (79%), Gaps = 3/191 (1%)
 Strand = Plus / Plus

                                                                       
Query: 184 cttaaacctcctcctggtggattcgttttcatccctccacccgagccccgcactcgttcc 243
           ||||||||||| || | ||||||| ||||  |||||||||| |||||||| || | ||| 
Sbjct: 196 cttaaacctccaccagctggattcatttttctccctccaccggagccccgtacccattcg 255

                                                                       
Query: 244 ttccgatcaagtcaacgtacccgctctgaacgttggcggttcgaacaacccactcgtgta 303
           || |||||    | ||| ||||| || ||||| ||||||||||| ||||| || ||||| 
Sbjct: 256 tttcgatccgccccacgcacccgatccgaacgctggcggttcgatcaacctacccgtgtt 315

                                                                       
Query: 304 agacctgaatgcgtctcacccggatgttttcc---atcacctttattaaagaggaaagac 360
            | || ||||| || || ||||| ||||| ||   ||||||| ||||||||||||||| |
Sbjct: 316 ggccccgaatgtgtatcgcccgggtgtttcccgtcatcacctctattaaagaggaaaggc 375

                      
Query: 361 agtaagagaag 371
           || ||||||||
Sbjct: 376 agcaagagaag 386