Jatropha Genome Database

JcCB0064191.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0064191.10 + phase: 1 /partial
         (617 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29648.m002000 replication factor C / DNA polymerase III gamma-ta...   478   e-134

>29648.m002000 replication factor C / DNA polymerase III gamma-tau
            subunit, putative
          Length = 1029

 Score =  478 bits (241), Expect = e-134
 Identities = 464/543 (85%), Gaps = 19/543 (3%)
 Strand = Plus / Plus

                                                                        
Query: 50   gatcatagagccacttgcttcaagatgtgcgaaattcaggtttaagccactttcagaaga 109
            |||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct: 471  gatcatagagccacttgcttcaagatgtgccaaatttaggttcaagccactttcagaaga 530

                                                                        
Query: 110  catcatgagcgatcgtatattgtacatttgcaaagaagaaggccttaatatagatgcaga 169
             || ||||||   ||| ||||| | || |||| ||| |||||||| ||  | || |||||
Sbjct: 531  aataatgagcagccgtgtattgcatatatgcagagaggaaggcctaaacctggacgcaga 590

                                                                        
Query: 170  ggccctttccaccttaagctctatatcacaaggggatcttcgtcgggctatcacttattt 229
            ||| ||||| ||  |||||| | |||||||||| |||||||||||||||||||| || ||
Sbjct: 591  ggctctttcaacactaagctatgtatcacaaggtgatcttcgtcgggctatcacatactt 650

                                                                        
Query: 230  gcaaggggctgctcgcttatttggatcaacaatttcatcaaaggacctaataagtgtatc 289
            |||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 651  gcaaggagctgctcgcttatatggatcaacaatttcatctaaggacctaataagtgtatc 710

                                                                        
Query: 290  tggggtcattccaaaggagtttttaggtgcattttatgcagcatgcaaaagtggtgactt 349
            ||||||||||||| | |||  | |||| ||| ||||||| ||||||| ||||||||||||
Sbjct: 711  tggggtcattccacaagaggctgtaggggcactttatgctgcatgcagaagtggtgactt 770

                                                                        
Query: 350  tgatttggcaaacaaggaggtcaataatataattgcagaaggatatccagtctcccagat 409
            |||| ||||||||||||||||||| || || |||||||||||||||||||| || || ||
Sbjct: 771  tgatatggcaaacaaggaggtcaacaacattattgcagaaggatatccagtttctcaaat 830

                                                                        
Query: 410  gcttgttcagctgtttgatctagtggttgaagcagatgatatatcagatgaacaaaaagc 469
            ||||||||||||  | ||  | |||||||||||||||||||||||||||||||| |||||
Sbjct: 831  gcttgttcagctactggaggtggtggttgaagcagatgatatatcagatgaacagaaagc 890

                                                                        
Query: 470  tcgaatatgcaagagtttggctgcagctgataa-------------------gatgaata 510
            || ||||||||||||||||| ||||||||||||                   ||||||||
Sbjct: 891  tcaaatatgcaagagtttgggtgcagctgataagtgtcttgttgatggtgctgatgaata 950

                                                                        
Query: 511  cttacagctgctggatgtggccagcaacacaatgcgagcactgtgtaacatgccacaaga 570
            ||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 951  cttgcagctgctggatgtggccagcaacacaatgcgagctctttgtaatatgccacaaga 1010

               
Query: 571  att 573
            |||
Sbjct: 1011 att 1013