Jatropha Genome Database
- JcCB0062371.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0062371.10 + phase: 0
(753 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29912.m005290 DNA binding protein, putative 948 0.0
29739.m003593 DNA binding protein, putative 369 e-101
30063.m001414 ATP synthase alpha subunit mitochondrial, putative 90 2e-17
29701.m000581 phd/F-box containing protein, putative 60 2e-08
28162.m000123 phd/F-box containing protein, putative 58 8e-08
>29912.m005290 DNA binding protein, putative
Length = 756
Score = 948 bits (478), Expect = 0.0
Identities = 687/756 (90%), Gaps = 3/756 (0%)
Strand = Plus / Plus
Query: 1 atggacggaggcgcacagtacaacccacgaacagtggaagaggttttcagggacttcaag 60
||||||||||| | ||||||||||||| ||||||| ||||||||||| |||||||| |||
Sbjct: 1 atggacggaggggtacagtacaacccaagaacagttgaagaggtttttagggactttaag 60
Query: 61 ggccgtagagctggaatgatcaaagccctcactactgatgtagaagagttctatcagcag 120
||||||||||||||||||||||||||||| || |||||||| |||||||| ||||| |||
Sbjct: 61 ggccgtagagctggaatgatcaaagcccttaccactgatgtggaagagttttatcaacag 120
Query: 121 tgcgatcctgagaaggaaaatctttgcctgtatggattccctaatgaacagtgggaagtc 180
|| |||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 121 tgtgatcctgagaaggagaatctttgcctatatggattccctaatgaacaatgggaagtc 180
Query: 181 aatttacctgctgaagaagtgcctccagagcttccggagcctgcattaggtattaacttt 240
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 181 aatttacctgctgaagaagtgcctccagagctccctgagcctgcattaggtattaacttt 240
Query: 241 gcgagagatgggatgcaagaaaaagattggctttctctagtagctgttcatagtgatgca 300
|| ||||| ||||||||||||||||| ||||||||||| || ||||| || ||||||||
Sbjct: 241 gctagagacgggatgcaagaaaaagactggctttctcttgttgctgtgcacagtgatgct 300
Query: 301 tggttacttgctgtggctttctatttcggtgctagatttggttttgataaagctgacagg 360
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 301 tggttacttgctgtggctttctattttggtgctcgatttggttttgataaagctgacagg 360
Query: 361 aaacgtctcttcactatgataaatgatcttcccacaatatttgaggttgtgactggaagt 420
|||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| |
Sbjct: 361 aaacgtcttttcactatgataaatgatcttccaacaatatttgaagttgtgactggaact 420
Query: 421 gtaaagaaacaggcaaaggataag---tcagtctcaaatcatagcagtaacaagaccaag 477
| ||||||||| |||||||| ||| ||||||||||||||||||||||||||| |||||
Sbjct: 421 gcaaagaaacaagcaaaggagaagtcatcagtctcaaatcatagcagtaacaagtccaag 480
Query: 478 tcgagctcgaaagggcgtggaactgactctggcaaattttcgaaggggcaaccaaaggat 537
|| |||||||||||||| ||| |||| || || |||| ||| |||| |||||| ||||||
Sbjct: 481 tcaagctcgaaagggcggggatctgaatccggaaaatattcaaaggcgcaacctaaggat 540
Query: 538 gaagatgaaggattggacgaagaagaggatgaagagcatggagatacattatgtggggca 597
||||||||||||||||| || ||||| || || |||||||| ||||| || || ||||||
Sbjct: 541 gaagatgaaggattggatgaggaagatgaggaggagcatggggatactttgtgcggggca 600
Query: 598 tgcggagagaactatgctgcagatgaattctggatttgttgcgacatatgtgagaagtgg 657
|| || |||||||| || |||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 601 tgtggggagaactacgcagcagatgagttctggatttgttgtgacatatgtgagaagtgg 660
Query: 658 ttccatggcaagtgcgtgaagatcactcctgccagggctgagcacattaagcagtataaa 717
|||||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||
Sbjct: 661 ttccatggcaagtgtgtgaagatcactcctgctagagctgagcatattaagcagtataaa 720
Query: 718 tgcccgtcgtgcagcaacaagagagcgcgaccttga 753
|||||||||||||||||||||||||| || ||||||
Sbjct: 721 tgcccgtcgtgcagcaacaagagagcacggccttga 756
>29739.m003593 DNA binding protein, putative
Length = 756
Score = 369 bits (186), Expect = e-101
Identities = 568/692 (82%), Gaps = 15/692 (2%)
Strand = Plus / Plus
Query: 61 ggccgtagagctggaatgatcaaagccctcactactgatgtagaagagttctatcagcag 120
|||||||||||||| ||||| | ||| ||||||||||| || |||||||| || ||||||
Sbjct: 61 ggccgtagagctggcatgattagagctctcactactgacgttgaagagttttaccagcag 120
Query: 121 tgcgatcctgagaaggaaaatctttgcctgtatggattccctaatgaacagtgggaagtc 180
||||||||||||||||||||||||||| | ||||| || || | ||| |||||||| |||
Sbjct: 121 tgcgatcctgagaaggaaaatctttgcttatatgggtttcccagtgagcagtgggaggtc 180
Query: 181 aatttacctgctgaagaagtgcctccagagcttccggagcctgcattaggtattaacttt 240
||||| ||||||||||| ||||||||||| ||||| |||||||| || ||||||||||||
Sbjct: 181 aatttgcctgctgaagaggtgcctccagaacttcctgagcctgctttgggtattaacttt 240
Query: 241 gcgagagatgggatgcaagaaaaagattggctttctctagtagctgttcatagtgatgca 300
|| |||||||| ||||||||||| || ||| | || || || || |||||||||||||||
Sbjct: 241 gccagagatggaatgcaagaaaaggactggttgtcgctggttgcggttcatagtgatgca 300
Query: 301 tggttacttgctgtggctttctatttcggtgctagatttggttttgataaagctgacagg 360
||||||||||| || || || ||||| || ||||| ||||| ||||| ||||||||||||
Sbjct: 301 tggttacttgccgtcgccttttattttggggctaggtttggatttgacaaagctgacagg 360
Query: 361 aaacgtctcttcactatgataaatgatcttcccacaatatttgaggttgtgactggaagt 420
||||| || |||| ||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 361 aaacgccttttcaacatgataaatgaccttccaacaatatttgaggttgtgacaggaaca 420
Query: 421 gtaaagaaacaggcaaaggataag---tcagtctcaaatcatagcagtaacaagaccaag 477
| |||||||| | |||||| ||| || || || |||||||| || ||||| | ||
Sbjct: 421 gccaagaaacaagtaaaggagaagtcctcggtgtcgaatcatagtagcaacaaagctaaa 480
Query: 478 tcgagctcgaaagggcgtggaactgactct---ggcaaattttcgaagg---ggcaacca 531
|||| ||| || ||| || | || ||| ||||| ||||| |||| |||| ||
Sbjct: 481 tcgaactctaa---gcggggttccgaatctcaaggcaagttttcaaaggtaatgcaatca 537
Query: 532 aaggatgaagatgaaggattggacgaagaagaggatgaagagcatggagatacattatgt 591
|||||||| ||||| | ||| ||||| || ||||| |||||||| || |||||||||
Sbjct: 538 aaggatgaggatgatg---aggaagaagaggaagatgaggagcatggggagacattatgt 594
Query: 592 ggggcatgcggagagaactatgctgcagatgaattctggatttgttgcgacatatgtgag 651
|| || || ||||| || ||||| | ||||| ||||||||||| ||||| ||||||||
Sbjct: 595 ggtgcttgtggagaaaattatgcatctgatgagttctggatttgctgcgatatatgtgaa 654
Query: 652 aagtggttccatggcaagtgcgtgaagatcactcctgccagggctgagcacattaagcag 711
|||||||||||||| ||||| || |||||||| || || || |||||||||||||||||
Sbjct: 655 aagtggttccatgggaagtgtgttaagatcaccccggctagagctgagcacattaagcaa 714
Query: 712 tataaatgcccgtcgtgcagcaacaagagagc 743
|| || || || || |||||||||||||||||
Sbjct: 715 tacaagtgtccatcttgcagcaacaagagagc 746
>30063.m001414 ATP synthase alpha subunit mitochondrial, putative
Length = 1104
Score = 89.7 bits (45), Expect = 2e-17
Identities = 171/213 (80%)
Strand = Plus / Plus
Query: 199 gtgcctccagagcttccggagcctgcattaggtattaactttgcgagagatgggatgcaa 258
|||||||| |||||||| ||||| || |||||||||| ||||| |||||||| |||||
Sbjct: 538 gtgcctcctgagcttcctgagccagctctaggtattaattttgccagagatggaatgcag 597
Query: 259 gaaaaagattggctttctctagtagctgttcatagtgatgcatggttacttgctgtggct 318
|| || |||||| | || || || || |||||||||||| ||||||| |||||||| ||
Sbjct: 598 gagaaggattggttatcacttgttgcagttcatagtgattcatggttgcttgctgtagca 657
Query: 319 ttctatttcggtgctagatttggttttgataaagctgacaggaaacgtctcttcactatg 378
|| ||||| ||||| | ||||| |||| ||| ||| ||||| | || ||| |||
Sbjct: 658 ttttattttggtgcacgctttgggtttggtaagaatgaaaggaagaggcttttccagatg 717
Query: 379 ataaatgatcttcccacaatatttgaggttgtg 411
|||||||| ||||| ||||||||||| ||||||
Sbjct: 718 ataaatgaacttccaacaatatttgaagttgtg 750
Score = 61.9 bits (31), Expect = 5e-09
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 619 gatgaattctggatttgttgcgacatatgtgagaagtggttccatggcaagtgcgtgaag 678
||||||||||||||||| ||||| ||||||||| ||||| |||||||| || || |||
Sbjct: 970 gatgaattctggatttgctgcgatgtatgtgagagatggtttcatggcaaatgtgtcaag 1029
Query: 679 atcactcctgccagggctgagcacattaagcagta 713
|| || ||||| | |||||| || || ||||||||
Sbjct: 1030 attacacctgcaaaggctgaacatatcaagcagta 1064
>29701.m000581 phd/F-box containing protein, putative
Length = 720
Score = 60.0 bits (30), Expect = 2e-08
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 619 gatgaattctggatttgttgcgacatatgtgagaagtggttccatggcaagtgcgtgaag 678
||||| ||||||||| | || || ||||| |||| |||||||||||| ||||||||||||
Sbjct: 586 gatgagttctggattggctgtgatatatgcgagaggtggttccatgggaagtgcgtgaag 645
Query: 679 at 680
||
Sbjct: 646 at 647
>28162.m000123 phd/F-box containing protein, putative
Length = 723
Score = 58.0 bits (29), Expect = 8e-08
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 196 gaagtgcctccagagcttccggagcctgcattaggtattaactttgcgagagatgggatg 255
||||| ||||| ||||| || ||||| ||||| ||||| || ||||| |||||||| |||
Sbjct: 193 gaagttcctccggagctcccagagccagcattgggtatcaattttgcaagagatggtatg 252
Query: 256 caagaaaaagattggctttctctagtagctgttcatagtga 296
|| |||||||||||||| || || ||||| ||||||||
Sbjct: 253 caccgcaaagattggctttcacttgttgctgtgcatagtga 293