Jatropha Genome Database

JcCB0061481.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0061481.10 - phase: 2 /partial
         (352 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29646.m001074 DNA-directed RNA polymerase, putative                   238   2e-62

>29646.m001074 DNA-directed RNA polymerase, putative
          Length = 2034

 Score =  238 bits (120), Expect = 2e-62
 Identities = 252/296 (85%)
 Strand = Plus / Plus

                                                                        
Query: 8    ttgattcgccaaggtttgcgggacttggctgtttctcagtctactcttccaaaggcagat 67
            |||||| ||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct: 1657 ttgatttgccaaggtttgcgggacttggctgtttctcaatctactcttccaaaagctgat 1716

                                                                        
Query: 68   cctaggattgcaaaacttgcagcagatggtgctgatgcacctctagaggagcttcaagaa 127
            || || |||||   |   |||||   |||||||||||| ||||  ||||||||||| |||
Sbjct: 1717 cccagaattgctgtagcggcagcctctggtgctgatgctcctccggaggagcttcaggaa 1776

                                                                        
Query: 128  atcataagtgaagttgcaaccaatattcatggttcttatgttctgaagtcatctccagat 187
            ||||||||  |||| ||||| ||||||||||||| ||||||| |||||||||| ||||| 
Sbjct: 1777 atcataagccaagtggcaactaatattcatggtttttatgttttgaagtcatcaccagaa 1836

                                                                        
Query: 188  cacccgcaatatgatgtgttgaggaaagttgtaattgatctcctattggcgaggggtccc 247
            ||||| ||||||||||  || ||||||||  |||| ||||||||||||||  | || |||
Sbjct: 1837 cacccacaatatgatgaattaaggaaagtcataatagatctcctattggcacgaggcccc 1896

                                                                    
Query: 248  aatgcaaagcttaagaagtctgaagtctatgaagcagccaagcttgttttgaagag 303
            |||||||||||||||||| ||||||||| ||| ||||||| ||||| ||| |||||
Sbjct: 1897 aatgcaaagcttaagaaggctgaagtctttgaggcagccaggcttgcttttaagag 1952