Jatropha Genome Database

JcCB0061321.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0061321.10 + phase: 0 /pseudo/partial
         (300 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30000.m000379 ubiquitin, putative                                      64   5e-10
28629.m000567 ubiquitin, putative                                      54   5e-07

>30000.m000379 ubiquitin, putative
          Length = 387

 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 92/110 (83%), Gaps = 4/110 (3%)
 Strand = Plus / Plus

                                                                       
Query: 165 atggctttggctcgcaaatataatcaaagataagatgatttgtcgcaagtgct---ctcg 221
           |||||||||||||||||||| || | |||| ||||||||||| |||||||| |   ||||
Sbjct: 247 atggctttggctcgcaaatacaa-ccaagacaagatgatttgccgcaagtgttatgctcg 305

                                                             
Query: 222 tgtacatccatgggctgtaaattgctggaagaagaagtgcggccatagca 271
           | | |||||| ||||||| || ||| |||||||||| || ||||| ||||
Sbjct: 306 tctgcatccaagggctgttaactgcaggaagaagaaatgtggccacagca 355



 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 73  ttgaagatggccgaaccttggcggattacaatatccataaagaatct 119
           ||||||||||  |||| ||||| |||||||||||||| |||||||||
Sbjct: 149 ttgaagatggtagaactttggctgattacaatatccagaaagaatct 195


>28629.m000567 ubiquitin, putative
          Length = 387

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                              
Query: 68  gcagtttgaagatggccgaaccttggcggattacaatatccataaagaatc 118
           |||| ||||||||||  ||||||| || |||||||||||||| ||||||||
Sbjct: 144 gcagcttgaagatggaagaaccttagctgattacaatatccagaaagaatc 194