Jatropha Genome Database

JcCB0060791.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0060791.10 - phase: 0 /partial
         (668 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29780.m001319 RNA-binding protein Nova-1, putative                    480   e-135

>29780.m001319 RNA-binding protein Nova-1, putative
          Length = 1635

 Score =  480 bits (242), Expect = e-135
 Identities = 377/422 (89%)
 Strand = Plus / Plus

                                                                       
Query: 241 tatcatggttcacaaggcataagtaagaaaatcacaattcctaatggcaaggttggtgtg 300
           |||||||| |||||||||| |||||||| |||||| ||||||| ||||||||||||||| 
Sbjct: 238 tatcatggctcacaaggcacaagtaagagaatcactattcctagtggcaaggttggtgtt 297

                                                                       
Query: 301 gttataggcagaggaggagaaacaataaaatatatccaagtgcagtccggggccaaaatt 360
           |||||||| | ||||||||||||||| ||| |||| ||| | ||||| ||||| ||||| 
Sbjct: 298 gttatagggaaaggaggagaaacaattaaaaatattcaacttcagtcaggggctaaaatc 357

                                                                       
Query: 361 caaattaccaaggatcaagatgctgatccccattctctaacaagggatgtagagttgatg 420
           |||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 358 caaattacaaaggatcaagatgctgatccccattctttgacaagggatgtagagttgatg 417

                                                                       
Query: 421 ggtagttcagatcaaattagcagggcagaagaacttatcaatgatgtgattgctgagaca 480
           || | |||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct: 418 ggcacttcagaacaaattagcagggcagaagagcttattaatgatgtgattgcggagaca 477

                                                                       
Query: 481 gatgcagggggctctgcttcatctgcagttcatggattggatacaaagcaaactggaggt 540
           |||||||||||||||||||| || ||||||||||||||| ||||||||||| |||||| |
Sbjct: 478 gatgcagggggctctgcttcttcggcagttcatggattgaatacaaagcaacctggagct 537

                                                                       
Query: 541 gaacagttcgcgatgaaagtcccaaatgacaaggttggattgcttattggcaagagtggt 600
           ||||| ||| | || | ||| || ||||| |||||||||||||| ||||||||| |||||
Sbjct: 538 gaacaattctcaatcagagttcctaatgataaggttggattgctcattggcaagggtggt 597

                                                                       
Query: 601 gacaccataaagtacatgcaaaacagatcaggggctcgtatgcagattattcccctccac 660
           || ||||||||||||||||||| |||||||||||| ||||||||||||||||| || |||
Sbjct: 598 gaaaccataaagtacatgcaaagcagatcaggggcacgtatgcagattattccacttcac 657

             
Query: 661 ct 662
           ||
Sbjct: 658 ct 659