Jatropha Genome Database

JcCB0059341.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0059341.10 + phase: 0 /partial
         (285 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m006864 LRX1, putative                                          153   7e-37
30128.m009045 DNA binding protein, putative                            54   5e-07

>30131.m006864 LRX1, putative
          Length = 357

 Score =  153 bits (77), Expect = 7e-37
 Identities = 180/213 (84%), Gaps = 6/213 (2%)
 Strand = Plus / Plus

                                                                       
Query: 79  ccaccaggaccgcgacagccatacgaaggttatcaaggctatttcgctgaaggatatcca 138
           ||||| ||||| || |||| ||||||||| ||||||||||||||||||||||| || |||
Sbjct: 142 ccacctggaccacgtcagcaatacgaagggtatcaaggctatttcgctgaagggtaccca 201

                                                                       
Query: 139 ccacctccaccgcagcccggtcagccgcagtatcagcat---tatcactgcgagcatcac 195
           ||||||||||| |  || |||| ||| || ||||| |||   |||||||  ||||| |||
Sbjct: 202 ccacctccacctcgtcctggtccgccccaatatcatcatcaatatcactatgagcaccac 261

                                                                       
Query: 196 cattatcaagataa---tgatggctgtacctcatttttgaggggatgtttggctgcactt 252
           ||||| ||||| ||   || |||||||||||| |||||    ||||||||||||||||||
Sbjct: 262 cattaccaagacaacactggtggctgtacctcgtttttccaaggatgtttggctgcactt 321

                                            
Query: 253 tgttgctgttgtgtgctggaggaatgctgcttc 285
           |||||||||||||||||||| ||||||||||||
Sbjct: 322 tgttgctgttgtgtgctggatgaatgctgcttc 354


>30128.m009045 DNA binding protein, putative
          Length = 279

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 234 gggatgtttggctgcactttgttgctg 260
           |||||||||||||||||||||||||||
Sbjct: 219 gggatgtttggctgcactttgttgctg 245