Jatropha Genome Database
- JcCB0057251.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0057251.10 - phase: 0
(1173 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29794.m003448 lupus la ribonucleoprotein, putative 337 9e-92
30146.m003577 lupus la ribonucleoprotein, putative 94 2e-18
>29794.m003448 lupus la ribonucleoprotein, putative
Length = 1485
Score = 337 bits (170), Expect = 9e-92
Identities = 615/762 (80%), Gaps = 21/762 (2%)
Strand = Plus / Plus
Query: 167 tggtgagtttggctttgatatgctcgtttaagaagatgaagggttatctgaaattgaatg 226
|||||||| || ||||||||||||| || || |||||||| |||||||| || ||| | |
Sbjct: 131 tggtgagtctgtctttgatatgctctttcaaaaagatgaaaggttatctcaagttgcaag 190
Query: 227 atgtgaagccggaagagatacccgaagatactttgaaggctgttgctgaaactcttagga 286
|||| ||||| ||||| | || ||| ||||| | ||||||||||||| ||||||||||
Sbjct: 191 atgtaaagccagaagacgttcctgaacatactgttcaggctgttgctgatactcttagga 250
Query: 287 agtctacttctcttaaggtttctgaagatgggaagaaagttggtagaattgctgcgctct 346
| || |||||||||||| | |||||||||||||||||||||||||| |||||||| || |
Sbjct: 251 aatccacttctcttaagatctctgaagatgggaagaaagttggtaggattgctgctcttt 310
Query: 347 taaagccagatgaggctatagagcagttagacgggagaacagttgctgcatcaccccttg 406
|||||||||| ||||| |||||||| |||||| |||||| |||||||||| || ||
Sbjct: 311 taaagccagaagaggcgatagagcaattagacataagaacaattgctgcatcgccactac 370
Query: 407 gctatgatgtgaagcgggaagatgtggagtctttctttggaaagtatgccaaggtgacta 466
||||||| || ||||||||| | || || || ||| | || |||||||| |||
Sbjct: 371 agtatgatgcaaaaatggaagatgttcaatcgtttttcggacaatacgccaaggtctcta 430
Query: 467 gtgtgagattgcctcgtcatgttgctgataaaagggtattctgtgggactgctttgattg 526
||||||| ||||||| ||||| ||||| ||||||||||| ||||| ||||||||||||
Sbjct: 431 gtgtgaggatgcctcgccatgtagctgacaaaagggtattttgtggttctgctttgattg 490
Query: 527 agttctcaacagaagaagatactgaaaacattttgaagcaaagtttggtttttgacggtg 586
||||||||| || |||||||||||||| |||| |||||||||||||||||| | ||||
Sbjct: 491 agttctcaaatgaggaagatactgaaaatgttttaaagcaaagtttggtttttaaaggtg 550
Query: 587 tacagctagaactaaagccaaagaaggagtttgatgctgatagagcagaactagaagagg 646
||||| |||| ||||||||||||||||| |||||| | || ||| ||| ||||||||
Sbjct: 551 tacagttagagctaaagccaaagaaggaatttgattcagaaagaattaaacaagaagagg 610
Query: 647 aattcaaaa---accgtcccttgacaggctcaaataataagaacaattccaatgcagaag 703
||||||||| |||||| || |||| |||||||| ||||| |||||||||||
Sbjct: 611 aattcaaaagttcccgtccattttcaggttcaaataacaagaa------caatgcagaag 664
Query: 704 cagcctaccccaagggtttgattgttgcatttacattaaagggcctgtcagctggaggtt 763
|| | || |||||||||||| | ||||| |||||||||||||| | |||||||| || |
Sbjct: 665 caacttatcccaagggtttggtggttgcctttacattaaagggtgtttcagctggtggat 724
Query: 764 ctgtaggaca------tgaccaagagcctgtaaatgttgaggcagatgtcaataaagaag 817
|||||| ||| || ||||||||||| | |||||| ||| ||| || |||| ||
Sbjct: 725 ctgtagaacaggatggtggtcaagagcctgtcagtgttgatgcaaatgccagcaaagcag 784
Query: 818 atggattgcc---ttccgtagagaatgctgatcaagaaaacaaag---aggtgtcagaga 871
||||| || ||| |||| |||||| | ||||||| |||| || |||||||||
Sbjct: 785 atggagaaccaaaatccttagaaaatgctagtgaagaaaataaagaaaagttgtcagaga 844
Query: 872 atgtctctggtgataaagaaaatgatgagatgaatattgagg 913
|| |||||| |||||||||||||||||||||||||||||||
Sbjct: 845 atatctctgccgataaagaaaatgatgagatgaatattgagg 886
Score = 85.7 bits (43), Expect = 6e-16
Identities = 81/91 (89%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 11 cttctttggatgaaggaaccgcgaaggaagtccttagacaggtggagttttac-tcagcg 69
||||| |||| |||||||| || |||||||||||||||||||||||||||||| |||| |
Sbjct: 11 cttctctggacgaaggaacagctaaggaagtccttagacaggtggagttttacttcagtg 70
Query: 70 acagcaatctgccgagagactaattttatga 100
| |||||||| || ||||| |||||||||||
Sbjct: 71 atagcaatctcccaagaga-taattttatga 100
Score = 67.9 bits (34), Expect = 1e-10
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 868 gagaatgtctctggtgataaagaaaatgatgagatgaatattgagg 913
||||||||||||| ||||||||||||| |||| |||||||||||||
Sbjct: 925 gagaatgtctctgctgataaagaaaatcatgaaatgaatattgagg 970
>30146.m003577 lupus la ribonucleoprotein, putative
Length = 1431
Score = 93.7 bits (47), Expect = 2e-18
Identities = 128/155 (82%)
Strand = Plus / Plus
Query: 423 ggaagatgtggagtctttctttggaaagtatgccaaggtgactagtgtgagattgcctcg 482
||||||||||||||||||||||| |||| || |||||| | ||| ||||| || |||||
Sbjct: 381 ggaagatgtggagtctttctttgctaagtttggcaaggttaatagcgtgaggttacctcg 440
Query: 483 tcatgttgctgataaaagggtattctgtgggactgctttgattgagttctcaacagaaga 542
|||| | || | || ||||| ||||| || ||||||||||||||||| || || || |
Sbjct: 441 tcatatggcaaacaatagggttttctgcggcactgctttgattgagttttctacggatgg 500
Query: 543 agatactgaaaacattttgaagcaaagtttggttt 577
|||| ||||| | ||||||||||||||| ||||||
Sbjct: 501 agatgctgaacatattttgaagcaaagtctggttt 535