Jatropha Genome Database

JcCB0055221.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0055221.20 + phase: 0 /pseudo
         (870 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m006956 hypothetical protein                                    139   3e-32

>30131.m006956 hypothetical protein
          Length = 582

 Score =  139 bits (70), Expect = 3e-32
 Identities = 85/90 (94%)
 Strand = Plus / Plus

                                                                       
Query: 162 tgaatctaaggttgaaacattgttagacagtgtaaaatgggatgacaaaggtttggcagt 221
           ||||||||||||||| || ||||||||||||||||||||||| || ||||||||||||||
Sbjct: 135 tgaatctaaggttgagacgttgttagacagtgtaaaatgggacgagaaaggtttggcagt 194

                                         
Query: 222 ggctattgctcaaaatattgacacaggagc 251
           |||||| |||||||||||||||||||||||
Sbjct: 195 ggctatagctcaaaatattgacacaggagc 224



 Score =  113 bits (57), Expect = 2e-24
 Identities = 222/277 (80%)
 Strand = Plus / Plus

                                                                       
Query: 574 cagcgtaaagcagaattagtagtgccagaagatggaaaaccctcttggactaagcgatta 633
           ||||| ||||||||||||| || |||| | || ||||||||||||||||| |   |||||
Sbjct: 283 cagcgcaaagcagaattagcagcgccacaggagggaaaaccctcttggaccagaagatta 342

                                                                       
Query: 634 ctactcgatcgcaacttattgtgttcaaaaatccgggaagaggcagatgaattatgccga 693
           |||   || |  |||||| | || ||||||||| |||| ||||| ||||| || ||||||
Sbjct: 343 ctagatgacccaaacttactatgctcaaaaatcagggaggaggcggatgagttgtgccga 402

                                                                       
Query: 694 acaatagaagaaaatgagcatagtgcacgaactgcttcagagatgggagatgtgctatac 753
           ||  |||| || |||||||| |||   |  ||||||||||||||||||||||| || |||
Sbjct: 403 acgctagaggagaatgagcacagtatccatactgcttcagagatgggagatgttctttac 462

                                                                       
Query: 754 cataccatggttctcttggctcttaaagacgtaaaaatagaagatgtgctagatgtcctt 813
           ||| |||||||| |  |||| | |||||| || || |||||||||||| |||| || || 
Sbjct: 463 catgccatggttttactggcacataaagatgtgaagatagaagatgtgttagacgtacta 522

                                                
Query: 814 cgacgtagattttctcaatccggtattgaggaaaaga 850
            |||  ||||||||||| || |||||||| |||||||
Sbjct: 523 agacagagattttctcagtcaggtattgatgaaaaga 559