Jatropha Genome Database

JcCB0053361.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0053361.10 + phase: 2 /partial/short
         (118 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28152.m000896 conserved hypothetical protein                           92   8e-19
28152.m000897 conserved hypothetical protein                           82   8e-16
30169.m006299 conserved hypothetical protein                           80   3e-15

>28152.m000896 conserved hypothetical protein
          Length = 183

 Score = 91.7 bits (46), Expect = 8e-19
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                       
Query: 11  gagggcaccgcgtcaggctggcttcacagagcagcgataacctctcactcctggcagtgg 70
           |||||||| |||| ||||||| |||||||||||||||||||||| | ||| |||||||||
Sbjct: 82  gagggcacagcgttaggctggtttcacagagcagcgataacctccctctcttggcagtgg 141

                     
Query: 71  aaggataacg 80
           ||||||||||
Sbjct: 142 aaggataacg 151


>28152.m000897 conserved hypothetical protein
          Length = 306

 Score = 81.8 bits (41), Expect = 8e-16
 Identities = 65/73 (89%)
 Strand = Plus / Minus

                                                                       
Query: 11  gagggcaccgcgtcaggctggcttcacagagcagcgataacctctcactcctggcagtgg 70
           |||||||| |||| ||||||| ||||||||||||||| ||||||   ||| |||||||||
Sbjct: 126 gagggcacagcgtgaggctggtttcacagagcagcgacaacctcctgctcttggcagtgg 67

                        
Query: 71  aaggataacgagt 83
           |||||||||||||
Sbjct: 66  aaggataacgagt 54


>30169.m006299 conserved hypothetical protein
          Length = 309

 Score = 79.8 bits (40), Expect = 3e-15
 Identities = 61/68 (89%)
 Strand = Plus / Plus

                                                                       
Query: 11  gagggcaccgcgtcaggctggcttcacagagcagcgataacctctcactcctggcagtgg 70
           ||||| ||||||||||||||||||||||||||||||| |||||| | |||  ||| ||||
Sbjct: 242 gagggtaccgcgtcaggctggcttcacagagcagcgacaacctccctctcacggcggtgg 301

                   
Query: 71  aaggataa 78
           ||||||||
Sbjct: 302 aaggataa 309