Jatropha Genome Database
- JcCB0050881.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0050881.20 + phase: 0 /partial
(456 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30003.m000328 actin, putative 650 0.0
29613.m000365 actin, putative 404 e-112
30206.m000761 actin, putative 391 e-108
29836.m000559 actin, putative 333 5e-91
30003.m000327 actin, putative 80 1e-14
>30003.m000328 actin, putative
Length = 930
Score = 650 bits (328), Expect = 0.0
Identities = 412/440 (93%)
Strand = Plus / Plus
Query: 13 gaggatattcagccccttgtctgtgacaatggaacaggaatggtcaaggccgggtttgct 72
||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 13 gaggacattcaaccccttgtctgtgacaatggaactggaatggtcaaggctgggtttgct 72
Query: 73 ggagatgatgctccacgtgctgtgtttcccagcattgttggtcgtcctcgtcacactggt 132
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 73 ggagatgatgctccacgtgctgtatttcccagcattgttggccgtcctcgtcacactggc 132
Query: 133 gtgatggttggcatgggccaaaaagatgcttatgttggtgatgaggctcaatccaagaga 192
||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct: 133 gtgatggttggtatgggccagaaagatgcatatgttggtgatgaggctcagtccaagagg 192
Query: 193 ggtattttgactttgaaatacccaattgagcatggtattgtgaataactgggatgacatg 252
|||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||
Sbjct: 193 ggtattttgactttgaaatatccaattgagcatggtattgtaagcaactgggatgacatg 252
Query: 253 gaaaagatctggcatcacacgttctacaatgagcttcgtgttgccccagaagagcaccct 312
||||||||||||||||| || || || |||||||||||||||||||||||||||||||||
Sbjct: 253 gaaaagatctggcatcatacattttataatgagcttcgtgttgccccagaagagcaccct 312
Query: 313 gtacttctaactgaggctcctttgaatcccaaggctaatcgtgagaagatgactcaaatc 372
|||||||||||||| |||||| |||| ||||||||||||||||| |||||||| ||||||
Sbjct: 313 gtacttctaactgaagctcctctgaaccccaaggctaatcgtgaaaagatgacccaaatc 372
Query: 373 atgtttgagaccttcaatactcctgctatgtacgtggccattcaggctgttctatccttg 432
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 373 atgtttgagaccttcaatactcctgctatgtatgttgccattcaggctgttctatccttg 432
Query: 433 tatgccagtggtcgaacaac 452
|||||||||||||| |||||
Sbjct: 433 tatgccagtggtcgcacaac 452
>29613.m000365 actin, putative
Length = 1134
Score = 404 bits (204), Expect = e-112
Identities = 372/428 (86%)
Strand = Plus / Plus
Query: 13 gaggatattcagccccttgtctgtgacaatggaacaggaatggtcaaggccgggtttgct 72
||||||||||| || || || ||||||||||| || |||||||| ||||| || ||||||
Sbjct: 13 gaggatattcaacctctcgtgtgtgacaatggtaccggaatggtgaaggctggctttgct 72
Query: 73 ggagatgatgctccacgtgctgtgtttcccagcattgttggtcgtcctcgtcacactggt 132
||||||||||||||| | |||||||| || || ||||| || || ||||| |||||||||
Sbjct: 73 ggagatgatgctccaagggctgtgttccctagtattgtgggacgccctcgccacactggt 132
Query: 133 gtgatggttggcatgggccaaaaagatgcttatgttggtgatgaggctcaatccaagaga 192
|||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 133 gtgatggtaggtatgggccaaaaagatgcctatgttggtgatgaggctcaatctaagaga 192
Query: 193 ggtattttgactttgaaatacccaattgagcatggtattgtgaataactgggatgacatg 252
||||||||||||||||| ||||||||||||||||| || || | || ||||||||||||
Sbjct: 193 ggtattttgactttgaagtacccaattgagcatggaatagttagcaattgggatgacatg 252
Query: 253 gaaaagatctggcatcacacgttctacaatgagcttcgtgttgccccagaagagcaccct 312
|| ||||| |||||||| || || ||||||||||| |||||||| || || ||||| |||
Sbjct: 253 gagaagatttggcatcataccttttacaatgagctccgtgttgctcctgaggagcatcct 312
Query: 313 gtacttctaactgaggctcctttgaatcccaaggctaatcgtgagaagatgactcaaatc 372
|| ||||| ||||| |||||| | ||||| ||||| ||||||||||||||||| || |||
Sbjct: 313 gttcttctcactgaagctcctctcaatcctaaggccaatcgtgagaagatgacacagatc 372
Query: 373 atgtttgagaccttcaatactcctgctatgtacgtggccattcaggctgttctatccttg 432
|||||||||||||| |||||||||||||||||||| ||||| ||||| || || ||| |
Sbjct: 373 atgtttgagacctttaatactcctgctatgtacgttgccatccaggccgtcctttccctt 432
Query: 433 tatgccag 440
||||||||
Sbjct: 433 tatgccag 440
>30206.m000761 actin, putative
Length = 1134
Score = 391 bits (197), Expect = e-108
Identities = 383/445 (86%)
Strand = Plus / Plus
Query: 12 cgaggatattcagccccttgtctgtgacaatggaacaggaatggtcaaggccgggtttgc 71
||||||||||||||||||||| || ||||||||||| |||||||| ||||| ||||||||
Sbjct: 12 cgaggatattcagccccttgtttgcgacaatggaactggaatggtgaaggctgggtttgc 71
Query: 72 tggagatgatgctccacgtgctgtgtttcccagcattgttggtcgtcctcgtcacactgg 131
||| ||||||||||| | || ||||| || || |||||||| | || || ||||||||
Sbjct: 72 tggtgatgatgctcccagggcagtgttccctagtattgttggaagaccccgacacactgg 131
Query: 132 tgtgatggttggcatgggccaaaaagatgcttatgttggtgatgaggctcaatccaagag 191
||| |||||||| ||||| || || ||||| ||||| |||||||| || ||||| || ||
Sbjct: 132 tgtcatggttggtatgggtcagaaggatgcctatgtaggtgatgaagcacaatctaaaag 191
Query: 192 aggtattttgactttgaaatacccaattgagcatggtattgtgaataactgggatgacat 251
||||||| | || ||||||||||| ||||||||||||||||| | ||||||||||| ||
Sbjct: 192 aggtattcttaccttgaaataccccattgagcatggtattgtcagcaactgggatgatat 251
Query: 252 ggaaaagatctggcatcacacgttctacaatgagcttcgtgttgccccagaagagcaccc 311
||||||||||||||||||||| ||||||||||||||||||||||| || || ||||| ||
Sbjct: 252 ggaaaagatctggcatcacactttctacaatgagcttcgtgttgctcctgaggagcatcc 311
Query: 312 tgtacttctaactgaggctcctttgaatcccaaggctaatcgtgagaagatgactcaaat 371
||| ||||| |||||||||||| | || || |||||||| | |||||||||||||| ||
Sbjct: 312 tgtgcttctcactgaggctcctctcaaccctaaggctaacagagagaagatgactcagat 371
Query: 372 catgtttgagaccttcaatactcctgctatgtacgtggccattcaggctgttctatcctt 431
||||||||||||||||||| ||||| ||||| || ||||| ||||| ||||| |||||
Sbjct: 372 catgtttgagaccttcaatgtgcctgcaatgtatgtcgccatccaggccgttctctcctt 431
Query: 432 gtatgccagtggtcgaacaactggt 456
||||||||||||||| |||||||||
Sbjct: 432 gtatgccagtggtcgtacaactggt 456
>29836.m000559 actin, putative
Length = 1134
Score = 333 bits (168), Expect = 5e-91
Identities = 375/444 (84%)
Strand = Plus / Plus
Query: 13 gaggatattcagccccttgtctgtgacaatggaacaggaatggtcaaggccgggtttgct 72
||||||||||| ||||| || || ||||||||||| |||||||| ||||| ||||| |||
Sbjct: 13 gaggatattcaacccctcgtttgcgacaatggaactggaatggtgaaggctgggttcgct 72
Query: 73 ggagatgatgctccacgtgctgtgtttcccagcattgttggtcgtcctcgtcacactggt 132
|| ||||||||||| | || ||||||||||| |||||||| | || || || ||||||
Sbjct: 73 ggtgatgatgctcccagggcagtgtttcccagtattgttggaagaccccgacatactggt 132
Query: 133 gtgatggttggcatgggccaaaaagatgcttatgttggtgatgaggctcaatccaagaga 192
|| |||||||| ||||| || || ||||||||||| |||||||| || || || || |||
Sbjct: 133 gtcatggttgggatgggtcagaaggatgcttatgtaggtgatgaagcacagtctaaaaga 192
Query: 193 ggtattttgactttgaaatacccaattgagcatggtattgtgaataactgggatgacatg 252
||||| | || ||||||||||| ||||||||||||||||| | ||||||||||| |||
Sbjct: 193 ggtatccttaccttgaaataccccattgagcatggtattgtcagcaactgggatgatatg 252
Query: 253 gaaaagatctggcatcacacgttctacaatgagcttcgtgttgccccagaagagcaccct 312
||||| |||||||||||||| ||||||||||||||||||||||| || || ||||| ||
Sbjct: 253 gaaaaaatctggcatcacactttctacaatgagcttcgtgttgctcccgaggagcatcca 312
Query: 313 gtacttctaactgaggctcctttgaatcccaaggctaatcgtgagaagatgactcaaatc 372
|||||||| ||||||||||| | || || ||||| || | |||||||||||||| |||
Sbjct: 313 gtacttcttactgaggctcccctcaaccctaaggccaacagggagaagatgactcagatc 372
Query: 373 atgtttgagaccttcaatactcctgctatgtacgtggccattcaggctgttctatccttg 432
|||||||||||||| ||| ||||| ||||| || || || ||||||||||| ||||||
Sbjct: 373 atgtttgagacctttaatgtgcctgcaatgtatgttgctatccaggctgttctctccttg 432
Query: 433 tatgccagtggtcgaacaactggt 456
|||||||||||||| |||||||||
Sbjct: 433 tatgccagtggtcgtacaactggt 456
>30003.m000327 actin, putative
Length = 723
Score = 79.8 bits (40), Expect = 1e-14
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 13 gaggatattcagccccttgtctgtgacaatggaacaggaatggtcaag 60
||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 27 gaggatattcaaccccttgtctgtgacaatggaactggaatggtcaag 74