Jatropha Genome Database
- JcCB0050881.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0050881.10 + phase: 0 /pseudo/partial
(831 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30003.m000326 Synaptic glycoprotein SC2, putative 803 0.0
>30003.m000326 Synaptic glycoprotein SC2, putative
Length = 933
Score = 803 bits (405), Expect = 0.0
Identities = 652/737 (88%), Gaps = 6/737 (0%)
Strand = Plus / Plus
Query: 97 tacaagaagagtctcaaggattattgtgatgggaattcat------taactgtagtttta 150
|||||||||||||| |||||||| ||||||||||||||| |||| ||||||||
Sbjct: 190 tacaagaagagtcttaaggattactgtgatgggaattcagataatataacagtagttttc 249
Query: 151 aaggacctgggtccacaagtttcctatcgcacccnnnnnnnctgggagtacttgggtcct 210
||||| |||||||||||||| ||||| ||||| | || |||||||||||||||
Sbjct: 250 aaggatctgggtccacaagtatcctaccgcacactttttttcttcgagtacttgggtcct 309
Query: 211 ttggtcctttatcctgtcttttacttctttcctgtttaccagtactttggctacaagggg 270
||| |||| |||||||||||||||||||| ||||| ||| |||||||||| ||||||| |
Sbjct: 310 ttgatcctctatcctgtcttttacttcttccctgtgtacaagtactttggatacaaggag 369
Query: 271 gaacgcgtgatccaaccagttcagacatatgctttattgtattggtgcttccactacttc 330
||||| || ||||| |||||||||||||||||| | | || ||||||||||| ||||||
Sbjct: 370 gaacgtgtcatccacccagttcagacatatgctatgtactactggtgcttccattacttc 429
Query: 331 aaacgcatcatggaaacattttttgtgcaccgatttagccatgcaacttcaccactgtcc 390
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct: 430 aaacgtatcatggaaacattttttgtgcaccgatttagccatgcaacatcaccgctctcc 489
Query: 391 aatgtgttccgaaattgtgcttattactggacatttggttgctatattgcttactatgtg 450
||||| |||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct: 490 aatgttttccgaaattgtgcttattattggacctttggttcctatattgcttactatgtg 549
Query: 451 aaccacccactttacactcctgttagcgatcttcaatggaagattggatttgggtttggt 510
|||||||||||||||||||||||| | ||||||||| ||||||||| ||||| ||||||
Sbjct: 550 aaccacccactttacactcctgttggtgatcttcaaatgaagattggttttggttttggt 609
Query: 511 ttgatttgtcaagttgcaaacttttattgccacatcttgctaaaaaatcttcgcagtcca 570
|||||||||||| |||| ||||| ||||| ||||||||||| |||||||||||||| ||
Sbjct: 610 ttgatttgtcaaattgccaacttctattgtcacatcttgctgaaaaatcttcgcagccct 669
Query: 571 gatgggggtggagggtatcaaatcccacgtggatttctctttgatattgtgacctgtgca 630
||||| ||||||| ||||||||||||| ||| |||||||| |||||||||| || |||
Sbjct: 670 gatggcagtggaggttatcaaatcccacatgggtttctcttcaatattgtgacatgcgca 729
Query: 631 aattacacaacagagatctatcagtggttgggtttcaatattgcaacacagactgttgca 690
|| ||||||||||| || || |||||||||||||||||||||||||| ||||||||||||
Sbjct: 730 aactacacaacagaaatttaccagtggttgggtttcaatattgcaacgcagactgttgca 789
Query: 691 ggctacatctttcttgtggttgctgctatgatcatgaccaattgggcccttgcaaagcac 750
||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 790 ggctatatctttcttgtggttgccgcttcgatcatgaccaattgggcccttgcaaagcac 849
Query: 751 cgccgattgaagaagctatttgatgggaaggatggaagacctaaatatccacgccgatgg 810
|||||| ||| |||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct: 850 cgccgactgaggaagctatttgacggaaaggatggaagaccaaaatatccacgccgatgg 909
Query: 811 gttatactgcccccatt 827
|||||| ||||||||||
Sbjct: 910 gttatattgcccccatt 926
Score = 97.6 bits (49), Expect = 1e-19
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 23 aaaggaggacttgagcttaatgattcggctacagtggctgatctgcaggaggcaattcat 82
|||||||| || || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 aaaggaggcctcgacctcaatgattcggctacagtggctgatctgcaggaggcaattcat 102
Query: 83 aagcgaacc 91
|| ||||||
Sbjct: 103 aaacgaacc 111