Jatropha Genome Database
- JcCB0049821.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0049821.10 + phase: 0
(1806 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30169.m006276 Casbene synthase, chloroplast precursor, putative 272 7e-72
30169.m006286 Casbene synthase, chloroplast precursor, putative 145 1e-33
30169.m006283 Casbene synthase, chloroplast precursor 137 3e-31
30169.m006284 conserved hypothetical protein 60 5e-08
>30169.m006276 Casbene synthase, chloroplast precursor, putative
Length = 1845
Score = 272 bits (137), Expect = 7e-72
Identities = 676/856 (78%), Gaps = 6/856 (0%)
Strand = Plus / Plus
Query: 446 tccttaatgaaaaagattatgatctcttcactgttgctgtaatatttcgagtatttagac 505
||||| |||||||| | || ||||||| |||||||| | |||||||||| || ||||
Sbjct: 443 tccttgatgaaaaacaatacgatctctatactgttgcacttgtatttcgagttttcagac 502
Query: 506 agcatggtttcaaaatctcttctgatgtgttcaacaagttcaaggatagtgatggtaagt 565
|||||||||||||||| |||||| |||||||| |||| |||| ||| || ||||||| |
Sbjct: 503 agcatggtttcaaaatgtcttctaatgtgttccacaaattcacggacagccatggtaaat 562
Query: 566 tcaaggaatccctactaaatgatatcaaaggcatactgagcctttttgaagctacacatg 625
|||||| ||||| |||| ||| |||||| || || |||||||||||||||| |||
Sbjct: 563 tcaaggcttccctgctaagcgatgccaaaggtatgctcagcctttttgaagctagccatt 622
Query: 626 tgagcatgcctaatgaacccattttagatgaggccttagctttcaccaaggctttcttgg 685
| ||||||| | ||| |||| | ||||| ||||| ||||||||||||| || |||||
Sbjct: 623 taagcatgcatggagaagacattcttgatgaagcctttgctttcaccaaggattacttgg 682
Query: 686 aatcctctgcggttaag------tcattccctaatttcgcaaagcatataagcagtgcac 739
| |||||||| ||| | | || ||||||| | ||||||||||| | || |
Sbjct: 683 agtcctctgcagttgaccagtacttatgccctaatcttcaaaagcatataactaacgccc 742
Query: 740 tagagcagccggtacacaaaggcataccaaggctagaggcaagaaaatatattgatttat 799
| |||||||| | ||||||||||||||||| |||||||| || ||||| ||||| |||
Sbjct: 743 tggagcagcctttccacaaaggcataccaagactagaggccaggaaatacattgacctat 802
Query: 800 acgaggtcgatgaaagtcgaaatgaaactgtactagagcttgcaaagttggattttaaca 859
|||| | ||| ||| | ||||||||||| ||||| ||| ||||||||||||| | ||| |
Sbjct: 803 acgaaggcgacgaatgccgaaatgaaacagtactcgagtttgcaaagttggactataata 862
Query: 860 gagtgcagttgctacaccaagaagaattaagtcaattttcaaagtggtggaagagtttga 919
|||| || || |||||||| |||| |||| || || |||| ||||||||| | |
Sbjct: 863 gagtacaattattacaccaacaagagctaagccagttctcaacgtggtggaaagacctca 922
Query: 920 atattagtgcagaggtcccatatgcaagaaacagaatggcagagattttcttttgggcgg 979
|| || | | ||| | || ||||||||| ||||||||||||| |||||||||||||| |
Sbjct: 923 atcttgcttcggagattccttatgcaagagacagaatggcagaaattttcttttgggctg 982
Query: 980 tttctatgtattttgaacctcaatatgcaaaggctagaatgatcgtctccaaagtcgtat 1039
|| | ||||||||||| ||| | |||||| | ||| ||||||| | | ||||| ||||
Sbjct: 983 ttgcaatgtattttgagcctaagtatgcacaagctcgaatgattattgctaaagttgtat 1042
Query: 1040 tacttatctcactcatagacgatacaattgatgcatatgccactattgatgaaatccacc 1099
| || || ||||| |||| |||||| |||||||||||||||||||||| |||| ||| |
Sbjct: 1043 tgctcatatcacttgtagatgatacatttgatgcatatgccactattgaagaaacccatc 1102
Query: 1100 gtgttgcagatgcaatcgaaaggtgggatatgagattagtcgaccaactgccaaattaca 1159
| ||||||| ||| ||||||||||||||| ||| | | || || |||||| ||||||
Sbjct: 1103 ttcttgcagaagcattcgaaaggtgggataagagctgcctggatcagctgccagattaca 1162
Query: 1160 tgaaagtaatctatagattaattatcaacacatttgatgaatttgagaaagatttggaag 1219
||||||| ||||||| | || | | ||||| ||| |||||||||||| ||||||| |
Sbjct: 1163 tgaaagttatctataaactattgctaaacaccttttctgaatttgagaatgatttggcaa 1222
Query: 1220 cagaaggaaagtcctacagcgtcaagtatggaagggaagcgtatcaagagctagtgagag 1279
|| ||||||||||| || |||| ||||| |||||||||| |||||| ||||| ||||
Sbjct: 1223 aggagggaaagtcctatagtgtcagatatgggagggaagcgtttcaagaactagttagag 1282
Query: 1280 gctattacttggaggc 1295
|||| ||| |||||||
Sbjct: 1283 gctactacctggaggc 1298
Score = 81.8 bits (41), Expect = 1e-14
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 1487 tgaatgatataacgtcccatgagaccgagcaagatagaggacacgtttcatcttgcatcg 1546
||||||| |||| ||| |||| || ||||||| |||||||||| ||| |||||||||| |
Sbjct: 1490 tgaatgacataatgtctcatgtgagcgagcaaaatagaggacatgttgcatcttgcatag 1549
Query: 1547 attgctacatgaaccaatatg 1567
||||||||||||| |||||||
Sbjct: 1550 attgctacatgaaacaatatg 1570
>30169.m006286 Casbene synthase, chloroplast precursor, putative
Length = 1800
Score = 145 bits (73), Expect = 1e-33
Identities = 627/811 (77%), Gaps = 3/811 (0%)
Strand = Plus / Plus
Query: 488 tatttcgagtatttagacagcatggtttcaaaatctcttctgatgtgttcaacaagttca 547
|||| ||||| || |||||||||||||| ||||| |||||||||||||| | ||| ||||
Sbjct: 485 tattccgagttttcagacagcatggttttaaaatgtcttctgatgtgtttagcaaattca 544
Query: 548 aggatagtgatggtaagttcaaggaatccctactaaatgatatcaaaggcatactgagcc 607
|||| |||||||||||||||||||||||||||| |||| || || || || ||||
Sbjct: 545 aggacagtgatggtaagttcaaggaatccctacggggtgatgctaagggtatgctcagcc 604
Query: 608 tttttgaagctacacatgtgagcatgcctaatgaacccattttagatgaggccttagctt 667
||||||||||| | ||| | || ||| | ||| |||| | || || ||||| ||||
Sbjct: 605 tttttgaagcttcccatctaagtgtgcatggagaagacattcttgaagaagcctttgctt 664
Query: 668 tcaccaaggctttcttggaatcctctgcggttaagtcattccctaatttcgcaaagcata 727
||||||||| || ||| | |||||||| ||| ||| |||||||||| || || |||||
Sbjct: 665 tcaccaaggattacttacagtcctctgcagttgagttattccctaatctcaaaaggcata 724
Query: 728 taagcagtgcactagagcagccggtacacaaaggcataccaaggctagaggcaagaaaat 787
||| | || ||||||||||| | |||| ||| | || ||||||||||| || ||||
Sbjct: 725 taacgaacgccctagagcagcctttccacagtggcgtgccgaggctagaggccaggaaat 784
Query: 788 atattgatttatacgaggtcga---tgaaagtcgaaatgaaactgtactagagcttgcaa 844
|| ||| ||||||| | || |||| | || ||||||||| | || ||| ||||||
Sbjct: 785 tcatcgatctatacgaagctgatattgaatgccggaatgaaactctgctcgagtttgcaa 844
Query: 845 agttggattttaacagagtgcagttgctacaccaagaagaattaagtcaattttcaaagt 904
||||||||| ||| ||||| ||||| | |||||| |||| | | || || |||||||
Sbjct: 845 agttggattataatagagttcagttattgcaccaacaagagctgtgccagttctcaaagt 904
Query: 905 ggtggaagagtttgaatattagtgcagaggtcccatatgcaagaaacagaatggcagaga 964
||||||| ||||| || | | || | || ||||||||| |||||||||||||||
Sbjct: 905 ggtggaaagacctgaatcttgcttcggatattccttatgcaagagacagaatggcagaga 964
Query: 965 ttttcttttgggcggtttctatgtattttgaacctcaatatgcaaaggctagaatgatcg 1024
||||||||||||| || | ||||| ||||| ||| | |||||| | | |||||||
Sbjct: 965 ttttcttttgggcagtcgcgatgtactttgagcctgactatgcacacacccgaatgatta 1024
Query: 1025 tctccaaagtcgtattacttatctcactcatagacgatacaattgatgcatatgccacta 1084
| | || || ||||| ||||| ||||| ||||| |||||||||||||| ||||| || |
Sbjct: 1025 ttgcgaaggttgtattgcttatatcactaatagatgatacaattgatgcgtatgcaacaa 1084
Query: 1085 ttgatgaaatccaccgtgttgcagatgcaatcgaaaggtgggatatgagattagtcgacc 1144
| || |||| || | |||| || ||| ||| ||||||||| ||||| | ||||
Sbjct: 1085 tggaggaaactcatattcttgctgaagcagtcgcaaggtgggacatgagctgcctcgaga 1144
Query: 1145 aactgccaaattacatgaaagtaatctatagattaattatcaacacatttgatgaatttg 1204
| |||||| ||||||||||||| || |||| | || | | ||||| || |||||| |
Sbjct: 1145 agctgccagattacatgaaagttatttataaactattgctaaacaccttctctgaattcg 1204
Query: 1205 agaaagatttggaagcagaaggaaagtcctacagcgtcaagtatggaagggaagcgtatc 1264
||||||| ||| || ||||| ||||||||||||||||| || ||||||||||||| ||
Sbjct: 1205 agaaagaattgacggcggaaggcaagtcctacagcgtcaaatacggaagggaagcgtttc 1264
Query: 1265 aagagctagtgagaggctattacttggaggc 1295
|||| ||||||||||| || ||| |||||||
Sbjct: 1265 aagaactagtgagaggttactacctggaggc 1295
Score = 67.9 bits (34), Expect = 2e-10
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 1522 agaggacacgtttcatcttgcatcgattgctacatgaaccaatatggagt 1571
|||||||||||| ||||||||||||| ||||| ||||||||| |||||||
Sbjct: 1522 agaggacacgttgcatcttgcatcgactgctatatgaaccaacatggagt 1571
Score = 60.0 bits (30), Expect = 5e-08
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 1717 gtgagttataagtacggagatggatacaccgattcaaaacaattgaaagaatatgttaag 1776
|||||||| ||||| ||||| || ||||| ||||| | ||||||||| ||| |||||||
Sbjct: 1711 gtgagttacaagtatggagacggttacactgattcccagcaattgaaacaatttgttaag 1770
Query: 1777 ggattgttccttga 1790
||||||||| ||||
Sbjct: 1771 ggattgttcgttga 1784
>30169.m006283 Casbene synthase, chloroplast precursor
Length = 1806
Score = 137 bits (69), Expect = 3e-31
Identities = 626/811 (77%), Gaps = 3/811 (0%)
Strand = Plus / Plus
Query: 488 tatttcgagtatttagacagcatggtttcaaaatctcttctgatgtgttcaacaagttca 547
|||| ||||| || |||||||||||||| ||||| ||||| |||||||| | ||| ||||
Sbjct: 491 tattccgagttttcagacagcatggttttaaaatgtcttcggatgtgtttagcaaattca 550
Query: 548 aggatagtgatggtaagttcaaggaatccctactaaatgatatcaaaggcatactgagcc 607
|||| |||||||||||||||||||||||||||| |||| || || || || ||||
Sbjct: 551 aggacagtgatggtaagttcaaggaatccctacggggtgatgctaagggtatgctcagcc 610
Query: 608 tttttgaagctacacatgtgagcatgcctaatgaacccattttagatgaggccttagctt 667
||||||||||| | ||| | || ||| | ||| |||| | || || ||||| ||||
Sbjct: 611 tttttgaagcttcccatctaagtgtgcatggagaagacattcttgaagaagcctttgctt 670
Query: 668 tcaccaaggctttcttggaatcctctgcggttaagtcattccctaatttcgcaaagcata 727
||||||||| || ||| | |||||||| ||| ||| |||||||||| || || |||||
Sbjct: 671 tcaccaaggattacttacagtcctctgcagttgagttattccctaatctcaaaaggcata 730
Query: 728 taagcagtgcactagagcagccggtacacaaaggcataccaaggctagaggcaagaaaat 787
||| | || ||||||||||| | |||| ||| | || ||||||||||| || ||||
Sbjct: 731 taacgaacgccctagagcagcctttccacagtggcgtgccgaggctagaggccaggaaat 790
Query: 788 atattgatttatacgaggtcga---tgaaagtcgaaatgaaactgtactagagcttgcaa 844
|| ||| ||||||| | || |||| | || ||||||||| | || ||| ||||||
Sbjct: 791 tcatcgatctatacgaagctgatattgaatgccggaatgaaactctgctcgagtttgcaa 850
Query: 845 agttggattttaacagagtgcagttgctacaccaagaagaattaagtcaattttcaaagt 904
||||||||| ||| ||||| ||||| | |||||| |||| | | || || |||||||
Sbjct: 851 agttggattataatagagttcagttattgcaccaacaagagctgtgccagttctcaaagt 910
Query: 905 ggtggaagagtttgaatattagtgcagaggtcccatatgcaagaaacagaatggcagaga 964
||||||| ||||| || | | || | || ||||||||| |||||||||||||||
Sbjct: 911 ggtggaaagacctgaatcttgcttcggatattccttatgcaagagacagaatggcagaga 970
Query: 965 ttttcttttgggcggtttctatgtattttgaacctcaatatgcaaaggctagaatgatcg 1024
||||||||||||| || | ||||| ||||| ||| | |||||| | | |||||||
Sbjct: 971 ttttcttttgggcagtcgcgatgtactttgagcctgactatgcacacacccgaatgatta 1030
Query: 1025 tctccaaagtcgtattacttatctcactcatagacgatacaattgatgcatatgccacta 1084
| | || || ||||| ||||| ||||| ||||| |||||||||||||| ||||| || |
Sbjct: 1031 ttgcgaaggttgtattgcttatatcactaatagatgatacaattgatgcgtatgcaacaa 1090
Query: 1085 ttgatgaaatccaccgtgttgcagatgcaatcgaaaggtgggatatgagattagtcgacc 1144
| || |||| || | |||| || ||| ||| ||||||||| ||||| | ||||
Sbjct: 1091 tggaggaaactcatattcttgctgaagcagtcgcaaggtgggacatgagctgcctcgaga 1150
Query: 1145 aactgccaaattacatgaaagtaatctatagattaattatcaacacatttgatgaatttg 1204
| |||||| ||||||||||||| || |||| | || | | ||||| || |||||| |
Sbjct: 1151 agctgccagattacatgaaagttatttataaactattgctaaacaccttctctgaattcg 1210
Query: 1205 agaaagatttggaagcagaaggaaagtcctacagcgtcaagtatggaagggaagcgtatc 1264
||||||| ||| || ||||| ||||||||||||||||| || ||||||||||||| ||
Sbjct: 1211 agaaagaattgacggcggaaggcaagtcctacagcgtcaaatacggaagggaagcgtttc 1270
Query: 1265 aagagctagtgagaggctattacttggaggc 1295
|||| ||||||||||| || ||| |||||||
Sbjct: 1271 aagaactagtgagaggttactacctggaggc 1301
Score = 67.9 bits (34), Expect = 2e-10
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 177 agaagctcgtcccttagcctactttcctcctactgtatggggcgatcgacttgcttctct 236
||||| |||||| ||||| ||||||||||||||||| |||||| |||| ||||||| |
Sbjct: 183 agaagttcgtccattagcatactttcctcctactgtctggggcaatcgctttgcttcctt 242
Query: 237 taccttcaatcaaccggcatttgaat 262
|||||||||| | ||| ||||||||
Sbjct: 243 gaccttcaatccatcggaatttgaat 268
Score = 67.9 bits (34), Expect = 2e-10
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 1522 agaggacacgtttcatcttgcatcgattgctacatgaaccaatatggagt 1571
|||||||||||| ||||||||||||| ||||| ||||||||| |||||||
Sbjct: 1528 agaggacacgttgcatcttgcatcgactgctatatgaaccaacatggagt 1577
Score = 61.9 bits (31), Expect = 1e-08
Identities = 88/107 (82%)
Strand = Plus / Plus
Query: 1684 atgagaattgttaatcttgttcgcctaacagacgtgagttataagtacggagatggatac 1743
|||||||| |||||||| | || || || || |||||||| ||||| ||||| || |||
Sbjct: 1684 atgagaatagttaatctggcacgtcttacggatgtgagttacaagtatggagacggttac 1743
Query: 1744 accgattcaaaacaattgaaagaatatgttaagggattgttccttga 1790
|| ||||| | ||||||||| ||| |||||||||||||||| ||||
Sbjct: 1744 actgattcccagcaattgaaacaatttgttaagggattgttcgttga 1790
>30169.m006284 conserved hypothetical protein
Length = 195
Score = 60.0 bits (30), Expect = 5e-08
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 1717 gtgagttataagtacggagatggatacaccgattcaaaacaattgaaagaatatgttaag 1776
|||||||| ||||| ||||| || ||||| ||||| | ||||||||| ||| |||||||
Sbjct: 106 gtgagttacaagtatggagacggttacactgattcccagcaattgaaacaatttgttaag 165
Query: 1777 ggattgttccttga 1790
||||||||| ||||
Sbjct: 166 ggattgttcgttga 179