Jatropha Genome Database

JcCB0044181.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0044181.20 + phase: 0 /pseudo/partial
         (701 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30205.m001606 chaperonin containing t-complex protein 1, zeta su...   373   e-102

>30205.m001606 chaperonin containing t-complex protein 1, zeta
           subunit, tcpz, putative
          Length = 1608

 Score =  373 bits (188), Expect = e-102
 Identities = 299/336 (88%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtctctacgagttttgaaccctaatgcggaggttcttaacaaatcggcggcgcttcat 60
           |||||| | ||||| ||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct: 1   atgtctttgcgagtattgaaccctaatgcggaagttttaaacaaatcggcggcgcttcat 60

                                                                       
Query: 61  atgaatatcaatgccgcgaagggcttacaggacgtcctcaagaccaatctcggccctaaa 120
           ||||| || |||||||| || ||||| || || ||||||||  | || ||||||||||||
Sbjct: 61  atgaacattaatgccgccaaaggcttgcaagatgtcctcaaatctaacctcggccctaaa 120

                                                                       
Query: 121 ggcaccatcaagatgcttgttggtggagccggagatatcaagcttactaaggacggcaac 180
           |||||||||||||||||||||||||||||||| || ||||||||||| |||||||| |||
Sbjct: 121 ggcaccatcaagatgcttgttggtggagccggtgacatcaagcttaccaaggacggtaac 180

                                                                       
Query: 181 actctcttgaaagaaatgcaaattcaaaaccctactgcaattatgattgcaaggacagct 240
           ||||| || || ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 181 actctgttaaaggaaatgcaaattcaaaaccctacagcaattatgattgcaagaacagct 240

                                                                       
Query: 241 gttgcccaagatgatataagtggagatggtactacatctactgtgattttcattggagag 300
           ||||| ||||||||||||||||||||||||||||| |||||||| || || |||||||||
Sbjct: 241 gttgctcaagatgatataagtggagatggtactacttctactgttatctttattggagag 300

                                               
Query: 301 cttatgaaacagtcggaacggtacatcgatgaaggt 336
           |||||||| || || ||||| ||||| | |||||||
Sbjct: 301 cttatgaagcaatctgaacgctacattggtgaaggt 336



 Score =  250 bits (126), Expect = 1e-65
 Identities = 183/202 (90%)
 Strand = Plus / Plus

                                                                       
Query: 386 gtatgcatcctcgtgttttggttgatggttttgaggttgccaaaagagctacactccagt 445
           |||||||||| |||||| ||||||||||||||||  |||| ||||||||||| |||||||
Sbjct: 335 gtatgcatccacgtgttctggttgatggttttgaaattgcgaaaagagctactctccagt 394

                                                                       
Query: 446 ttcttgaaaaattcaagactcccgtgattatgggtgatgaacctgacaaagagattctaa 505
           |||||||||| || |||||||| ||| ||||||| ||||||||||||||||||||||| |
Sbjct: 395 ttcttgaaaagtttaagactcctgtggttatgggcgatgaacctgacaaagagattctga 454

                                                                       
Query: 506 aaatggtagcaagaacaacattgagaacaaagctatatgaagcattggcagatcaattaa 565
           ||||||| |||||||| ||| |||||||||||||||||||| | ||||||||||||||||
Sbjct: 455 aaatggtggcaagaacgacactgagaacaaagctatatgaaactttggcagatcaattaa 514

                                 
Query: 566 ctgatatagttgttaatgcggt 587
           ||||||| ||||| ||||||||
Sbjct: 515 ctgatatcgttgtcaatgcggt 536