Jatropha Genome Database

JcCB0041791.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0041791.20 - phase: 0 
         (576 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30055.m001618 conserved hypothetical protein                          331   3e-90

>30055.m001618 conserved hypothetical protein
          Length = 585

 Score =  331 bits (167), Expect = 3e-90
 Identities = 346/407 (85%), Gaps = 9/407 (2%)
 Strand = Plus / Plus

                                                                       
Query: 172 tcttcttcttcagctgaagaaattgccaaaaagtatggtctggaagctggtctgtggaag 231
           ||||||||||| ||||| || ||  |||| ||||||||||| ||||| ||||| ||| ||
Sbjct: 163 tcttcttcttctgctgaggatatcaccaagaagtatggtctagaagccggtctttggcag 222

                                                                       
Query: 232 atattcagcacaaaagagga---------acaagatggagaggaaaagaaatcaaagggt 282
           ||||||||||||||||||||         |   ||||| ||   ||| ||||||||||| 
Sbjct: 223 atattcagcacaaaagaggagaggaaggaaggtgatggtgaaacaaaaaaatcaaaggga 282

                                                                       
Query: 283 gagcaagcaaaggagctgctagcaaaatatggaggagcatacctggccacatcaattact 342
           || ||||| |||||||||||||| |||||||||||||||||||||||||| || ||||| 
Sbjct: 283 gaccaagccaaggagctgctagctaaatatggaggagcatacctggccacctccattaca 342

                                                                       
Query: 343 ctctccttaatctccttttctctctgttatgcactcattagcgcaggcattgatgtccaa 402
            | ||||| ||||| || ||||||||||||||||||||||  || |||||||||||||||
Sbjct: 343 ttatcctttatctctttctctctctgttatgcactcattaatgctggcattgatgtccaa 402

                                                                       
Query: 403 gctttgctgcaaaaggtgggaatttcaactgacgaggctggggagaaagttgggaccttt 462
           ||  |||||||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct: 403 gcactgctgcaaaaggtgggaatttcaactgatgcgactggggagaaagttgggaccttt 462

                                                                       
Query: 463 gctttggcgtatgctgcgcataaggctgcatctccaattaggtttcctccaactgtagct 522
           |||||||| |||||||| ||||||||||| ||||| || |||||||| || |||||||||
Sbjct: 463 gctttggcatatgctgcacataaggctgcctctcctataaggtttccccctactgtagct 522

                                                          
Query: 523 ctcactcccgttgttgcttcttggattggaaagaaagttgatcaaga 569
           ||||||||  |||||||  ||||||| ||||||||||| ||| ||||
Sbjct: 523 ctcactccaattgttgccacttggatcggaaagaaagtcgataaaga 569