Jatropha Genome Database
- JcCB0041791.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0041791.10 + phase: 0 /pseudo/partial
(888 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30055.m001619 E2F4,5, putative 589 e-167
28324.m000396 E2F4,5, putative 186 2e-46
>30055.m001619 E2F4,5, putative
Length = 1245
Score = 589 bits (297), Expect = e-167
Identities = 508/578 (87%), Gaps = 4/578 (0%)
Strand = Plus / Plus
Query: 118 gggacttgatgtctcaaggccaggagaagcagatgataatgttgctagtttgcaggcaga 177
|||||||||||||||| | ||||| ||||||||||| | ||| |||||||||||||||||
Sbjct: 606 gggacttgatgtctcacgaccaggggaagcagatgaaagtgtcgctagtttgcaggcaga 665
Query: 178 agttgaaaaccttaaccttcaggaacgcagattagatgaacaaataaga----tgcaaga 233
|||||||||||||||| || | ||||||||||||||||||||||||||| |||||||
Sbjct: 666 agttgaaaaccttaacattgatgaacgcagattagatgaacaaataagagaaatgcaaga 725
Query: 234 acgattaagggatctcagtgaagatgaaaataatcaaaagtggctttttgtcactgagga 293
| |||| ||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 726 aagattgagggaccttagtgaagatgaaaataatcagaagtggctttttgtcactgagga 785
Query: 294 agacatcaagagcttaccctctctccagaacgaaacattaatagcaattaaagctccaca 353
|||||||||||||||||| | ||||||| ||||| |||||||||||||||||||||||
Sbjct: 786 agacatcaagagcttaccatgcttccagaatgaaaccttaatagcaattaaagctccaca 845
Query: 354 tggaaccactctggaagtcccagatcctgatgaggctgttgactaccctcagaggagata 413
||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct: 846 tggaaccactctggaagtcccagatccggatgaggctgttgactatccccagaggagata 905
Query: 414 caggatagttcttagaagtacgatgggtcccatagatgtttatcttgttagtcaatttga 473
|||||||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct: 906 caggatagttctcagaagtacaatgggtccgatagatgtttatcttgtcagtcaatttga 965
Query: 474 ggagaaatttgaagagattcaaggtgttgagccacctccaaactatccatcaagttcagg 533
|||||| || || |||||||| |||| ||| || ||||||| ||||||||||||||| |
Sbjct: 966 ggagaagttcgaggagattcatggtgctgaacctcctccaacttatccatcaagttcaag 1025
Query: 534 atttaatgaaaatatggacactacaatgatcccaggagagagtagaggaaaggagattga 593
|||||||||||| | ||||| || | |||| || |||||||||||||||||||
Sbjct: 1026 ttttaatgaaaatccagcacctacagtggttccagaggatggtagaggaaaggagattga 1085
Query: 594 aatgcaaggacaagattctaatagaatgtgctcagatctcaccacctctcaggactttgt 653
|||||| ||| | ||| || | |||||||||||||| || | ||| || |||||||||||
Sbjct: 1086 aatgcagggagatgatgctcagagaatgtgctcagaacttagcacatcacaggactttgt 1145
Query: 654 gagtgggcttatgaagattgttccttcagaagtagata 691
||||||| | |||||||||||||| ||||| |||||||
Sbjct: 1146 gagtgggatcatgaagattgttccctcagatgtagata 1183
>28324.m000396 E2F4,5, putative
Length = 1356
Score = 186 bits (94), Expect = 2e-46
Identities = 199/234 (85%)
Strand = Plus / Plus
Query: 252 tgaagatgaaaataatcaaaagtggctttttgtcactgaggaagacatcaagagcttacc 311
||||||||| || |||||||||||||||||||| ||||| ||||| || |||||||| ||
Sbjct: 795 tgaagatgagaacaatcaaaagtggctttttgtaactgaagaagatattaagagcttgcc 854
Query: 312 ctctctccagaacgaaacattaatagcaattaaagctccacatggaaccactctggaagt 371
| | | |||||| |||| | ||||| ||||||| || ||||| || ||||| |||||
Sbjct: 855 ttgttttcagaaccaaaccctcatagccgttaaagccccccatggcactactctagaagt 914
Query: 372 cccagatcctgatgaggctgttgactaccctcagaggagatacaggatagttcttagaag 431
||| ||||||||||| ||||||||||| || |||||||||||||||||| | ||||||||
Sbjct: 915 ccctgatcctgatgaagctgttgactatccacagaggagatacaggataatccttagaag 974
Query: 432 tacgatgggtcccatagatgtttatcttgttagtcaatttgaggagaaatttga 485
| | |||||||| || |||||||| ||||| ||||||||||||||||| |||||
Sbjct: 975 ttcaatgggtccgattgatgtttaccttgtaagtcaatttgaggagaattttga 1028
Score = 93.7 bits (47), Expect = 2e-18
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 693 tgatgcagattactggcttctttcagatgctgatgttagcatcacagacatgtgg 747
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 1158 tgatgcagattactggcttctttcagatgctgatgttagcattacagatatgtgg 1212