Jatropha Genome Database

JcCB0041541.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0041541.20 - phase: 2 /pseudo/partial
         (481 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28256.m000141 Shikimate kinase, chloroplast precursor, putative       206   9e-53

>28256.m000141 Shikimate kinase, chloroplast precursor, putative
          Length = 942

 Score =  206 bits (104), Expect = 9e-53
 Identities = 188/216 (87%)
 Strand = Plus / Plus

                                                                       
Query: 57  agactgaagtgttaaagaagttgtctatgatgcatcatgttgttgtttctactggtggag 116
           ||||||| || ||||||||  | || |||||||||||  ||||||| |||||||||||||
Sbjct: 497 agactgaggtcttaaagaacctctcaatgatgcatcaaattgttgtgtctactggtggag 556

                                                                       
Query: 117 gtgcagttgtccggcctattaactggcaacacatgcggaagggaattagtgtctggttgg 176
           |||||||  | ||||| ||||||||| || ||||||  ||||| |||||||||||||| |
Sbjct: 557 gtgcagtcatacggccgattaactgggaatacatgcaaaagggcattagtgtctggttag 616

                                                                       
Query: 177 atgtgcctttggaagccttggcacagagaattgcagctgttggaactgaatctcgccccc 236
           |||||||||||||||||||||| ||||| |||||||| || |||||||| ||||||||||
Sbjct: 617 atgtgcctttggaagccttggcccagaggattgcagccgtgggaactgattctcgccccc 676

                                               
Query: 237 ttttgaatcatgaatctggcgatgcatacacaaagg 272
           ||||  |||||||||| || ||||||||||||||||
Sbjct: 677 ttttacatcatgaatcaggtgatgcatacacaaagg 712



 Score = 58.0 bits (29), Expect = 5e-08
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                       
Query: 278 aggcgcttgtctgctcttcttgaagaaagaggtgaattttatgcaaatgccaatacaagg 337
           |||||||||||| |||| |||||||| ||||  || |||||||||||||| ||| | || 
Sbjct: 813 aggcgcttgtctactctacttgaagagagagaagacttttatgcaaatgcaaatgctaga 872

                        
Query: 338 gtttctctggaaa 350
           |||||| ||||||
Sbjct: 873 gtttctttggaaa 885