Jatropha Genome Database
- JcCB0039021.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0039021.10 - phase: 0 /partial
(1537 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30170.m014161 Auxin response factor, putative 1433 0.0
29739.m003713 Auxin response factor, putative 84 3e-15
29769.m000463 Auxin response factor, putative 62 1e-08
30185.m000956 Auxin response factor, putative 60 4e-08
>30170.m014161 Auxin response factor, putative
Length = 2853
Score = 1433 bits (723), Expect = 0.0
Identities = 1230/1400 (87%), Gaps = 6/1400 (0%)
Strand = Plus / Plus
Query: 7 atgggttctgttgaagagaaaatcaaagcaggaggtttggtcaat---ggagcacaaacc 63
|||| |||||||||||||||||||||||||||| | || || | | |||||||||||
Sbjct: 1 atggcttctgttgaagagaaaatcaaagcaggaagctttgttagtagtggagcacaaact 60
Query: 64 aatttactcgaggaaatgaagttgttaaaagaaattcaagaccattcagggactcgtaag 123
||| | |||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct: 61 aatctgctcgaggaaatgaagttgttaaaagaaattcaggaccattccgggactcgcaag 120
Query: 124 acgataaattcggagttgtggtacgcatgtgctggtccgcttgtttccttgcctcaagtt 183
|| ||||| |||||| |||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct: 121 accataaactcggagctgtggtacgcttgtgcaggtccacttgtttccttgcctcaagtt 180
Query: 184 ggaagtcttgtgtattatttccctcaagggcacagtgaacaggtggcagtctccactaaa 243
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 181 ggaagtcttgtgtattatttccctcaaggacacagtgaacaggtggcagtgtccactaaa 240
Query: 244 agatcggcaacttcacaaattcctaactacccaaatctcccttctcagctattgtgccaa 303
|| | |||||||| |||||||||||||||||||||||| |||||||| | ||||||||
Sbjct: 241 aggacagcaacttcgcaaattcctaactacccaaatctcgcttctcagttgctgtgccaa 300
Query: 304 gttcacaatgttactctacatgcggataaagacacggatgaaatttatgcccaaatgagt 363
|||||||||||||| || ||||| || | ||| || ||||| || ||||| || |||||
Sbjct: 301 gttcacaatgttaccctgcatgctgacagagatactgatgagatctatgctcagatgagc 360
Query: 364 cttcaaccagtgaactctgaaaaagatgtcttcccaattccagattttggactaaaacca 423
||||||||||| || |||||||| |||||||| || || || |||||||| |||| ||
Sbjct: 361 cttcaaccagtaaattctgaaaaggatgtctttcccatacctgattttgggttaaagccc 420
Query: 424 agcaagcatccaagtgaannnnnnngcaaaaccttgacagcgagtgatacaagcacacat 483
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 421 agcaagcatccaagtgaatttttctgcaaaaccttgacagcaagtgatacaagcacacat 480
Query: 484 ggtggattctcggtgcctcgaagagctgcagaaaagctctttcctccattggattacaca 543
||||| ||||| ||||| || | || || ||||||||||||||||| ||||||||||||
Sbjct: 481 ggtgggttctcagtgccacggcgggcagcggaaaagctctttcctccgttggattacaca 540
Query: 544 atgcaaccaccaactcaagaacttgttgttagagacttacatgataatatttggacattt 603
|||||||||||||||||||| |||||||| |||||||| |||||||||| |||||||||
Sbjct: 541 atgcaaccaccaactcaagagcttgttgtcagagacttgcatgataatacatggacattt 600
Query: 604 cgccatatatatcgcgggcagccgaagcggcaccttcttacaactgggtggagtttattt 663
|| ||||||||||||||||| || ||||||||||||||||||||||| |||||| |||||
Sbjct: 601 cgtcatatatatcgcgggcaaccaaagcggcaccttcttacaactggctggagtctattt 660
Query: 664 gttggttcaaaaaggcttaaagcaggtgattctgttctgtttatcagggatgagaaatca 723
|| || |||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 661 gtcgggtcaaaaaggcttaaagcaggtgattctgttctatttatcagagatgaaaaatca 720
Query: 724 cagttattggtgggtgtaaggcgtgcaaatcgtcaacaaacaacattgccatcatctgtc 783
||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||| ||
Sbjct: 721 cagttattggtgggtgtgaggcgtgcaaatcgtcaacaaactacactaccatcattagtt 780
Query: 784 ctatctgctgatagcatgcatattggtgtccttgctgctgcagctcatgctgctgccaat 843
|| ||||| || ||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct: 781 ctttctgcagacagcatgcatattggtgttcttgcagctgcagcgcatgctgctgccaat 840
Query: 844 cggagtccattcaccattttttacaacccaagggcatgcccctcagagtttgtcattcct 903
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 841 cggagtccattcaccattttttataacccaagggcttgcccatcagagtttgttattcct 900
Query: 904 ttaaccaagtatagaaaagctatatatggaactcaagtttcagttggaatgaggtttgga 963
||| | || ||| |||||||| ||| ||| || |||||||||||||| |||||||||||
Sbjct: 901 ttagctaaatatcgaaaagctgtatttggtacccaagtttcagttggtatgaggtttggg 960
Query: 964 atgatgtttgagacagaggaatcaggcaaacgcagatatatgggcacaatagttggtatt 1023
||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 961 atgatgtttgaaacagaggagtcaggcaaacgcaggtatatgggcacaatagttggtatt 1020
Query: 1024 agtgacttagatccgctgaggtggcctggctccaagtggcgaaatcttcaggtcgagtgg 1083
|| ||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct: 1021 agcgacttagatccactgagatggcctggctccaaatggcgaaatcttcaggtagagtgg 1080
Query: 1084 gatgagtcagggtgttccgataagcagaatagggtcagttcatgggaaattgagactcct 1143
|| ||| |||| ||||| ||||||||||| || || ||||||||||||||||| ||||||
Sbjct: 1081 gacgagccaggatgttctgataagcagaacagagtgagttcatgggaaattgaaactcct 1140
Query: 1144 gaaagcctcttcatttttccttctctgacttcaggtctcaaacgacccttgcattcaggg 1203
|||| ||| |||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct: 1141 gaaaacctattcattttcccttctctgacttcaggtcttaaacgacctctgcattcagga 1200
Query: 1204 atgttaggaggagaaactgaatggagtaacttgataaaaagacccctcatctggcttcct 1263
|||||||||||||| |||||| | |||||||| |||||||| || ||||||||||||
Sbjct: 1201 tatttaggaggagaaacagaatgggggaacttgattaaaagaccacttatctggcttcct 1260
Query: 1264 gaacatggaaatgggaattttccatattcttcaattccaaacctgtattctgagagactt 1323
||| | ||||||||||||| ||||| |||||||||||||| ||| |||||| ||||
Sbjct: 1261 gaaacggcaaatgggaattttgcatatccttcaattccaaacttgtgttctgaccgactg 1320
Query: 1324 tacaagatgctaatgaaacctca---ggttaactatcctggaatctgtgagtctgccctc 1380
| ||||||||||||||||| || |||||||| |||||||| ||||||||| || |
Sbjct: 1321 tttaagatgctaatgaaaccccaaggtgttaactaccctggaatttgtgagtcttcctta 1380
Query: 1381 caagaactctgtgctgctaa 1400
|||||| ||| |||||||||
Sbjct: 1381 caagaagtctctgctgctaa 1400
>29739.m003713 Auxin response factor, putative
Length = 3360
Score = 83.8 bits (42), Expect = 3e-15
Identities = 395/512 (77%), Gaps = 3/512 (0%)
Strand = Plus / Plus
Query: 466 agtgatacaagcacacatggtggattctcggtgcctcgaagagctgcagaaaagctcttt 525
||||| ||||||||||| ||||||||||| || |||||| |||| || || ||| | |||
Sbjct: 397 agtgacacaagcacacacggtggattctctgtacctcgacgagcagctgagaagatattt 456
Query: 526 cctccattggattacacaatgcaaccaccaactcaagaacttgttgttagagacttacat 585
|| || | || | ||||||||||||| |||| || || || | ||||| ||||||
Sbjct: 457 ccacctctagacttttcaatgcaaccacctgctcaggagctggtagccagagatttacat 516
Query: 586 gataatatttggacatttcgccatatatatcgcgggcagccgaagcggcaccttcttaca 645
||||||| ||||| ||| | ||||| |||||||| || || ||| | || || || ||
Sbjct: 517 gataatacatggacgtttagacatatttatcgcggccaaccaaagagacatctgctcacc 576
Query: 646 actgggtggagtttatttgttggttcaaaaaggcttaaagcaggtgattctgttctgttt 705
|| || |||||| | |||||| || ||||||||||| || |||||||||||||| ||
Sbjct: 577 acaggttggagtgtctttgttagtacaaaaaggctttttgctggtgattctgttctattc 636
Query: 706 atcagggatgagaaatcacagttattggtgggtgtaaggcgtgcaaatcgtcaacaaaca 765
|| || || || ||||||||| | | |||| |||||||||| ||| | ||||| ||
Sbjct: 637 ataagagacgaaaaatcacagcttctcttggggataaggcgtgctaatagacaacagcca 696
Query: 766 acattgccatcatctgtcctatctgctgatagcatgcatattggtgtccttgctgctgca 825
| | | ||||| ||| |||| ||| |||||||||||||| | || |||||||||
Sbjct: 697 gctctctcttcatcagtcatatccagtgacagcatgcatattggcattctcgctgctgca 756
Query: 826 gctcatgctgctgccaatcggagtccattcaccattttttacaacccaagggcatgcccc 885
|||||||||||||| ||| || ||||| || || |||||||| ||||||||| ||||
Sbjct: 757 gctcatgctgctgcaaataacagcccatttactatattttacaatccaagggcaagccct 816
Query: 886 tcagagtttgtcattcctttaaccaagtatagaaaagctatatatggaactcaagtttca 945
|| |||||||| ||||| || | ||||||| ||||| || ||| || |||||||||
Sbjct: 817 tctgagtttgtgattcccttctcaaagtataacaaagcaatgtat---acacaagtttca 873
Query: 946 gttggaatgaggtttggaatgatgtttgagac 977
| || |||||||| |||||||||| |||||
Sbjct: 874 ctcggcatgaggttcagaatgatgttcgagac 905
>29769.m000463 Auxin response factor, putative
Length = 2481
Score = 61.9 bits (31), Expect = 1e-08
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 770 tgccatcatctgtcctatctgctgatagcatgcatattggtgtccttgctgctgcagctc 829
|||||||||| || ||||| |||||| ||||| ||||| ||||||||||||||||||
Sbjct: 704 tgccatcatcagttttatctagtgatagtatgcacattggactccttgctgctgcagctc 763
Query: 830 atgctgc 836
|||||||
Sbjct: 764 atgctgc 770
>30185.m000956 Auxin response factor, putative
Length = 3330
Score = 60.0 bits (30), Expect = 4e-08
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 544 atgcaaccaccaactcaagaacttgttgttagagacttacatgataatatttggacattt 603
|||||||| || ||||||||||||| | || || || ||||||||||| ||||| |||
Sbjct: 514 atgcaaccgcctgctcaagaacttgtagccagggatttgcatgataatatctggactttt 573
Query: 604 cgccatatatatcgcgggcagccgaagcggcaccttcttacaactgggtggagtttattt 663
|| ||||| ||||| || || || ||||| ||| | |||||||| |||||||| |||||
Sbjct: 574 cgtcatatctatcgtggacaacccaagcgtcacttgcttacaacagggtggagcctattt 633
Query: 664 gt 665
||
Sbjct: 634 gt 635