Jatropha Genome Database

JcCB0034671.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0034671.20 + phase: 0 /partial
         (340 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29970.m000990 chromatin binding protein, putative                     133   7e-31

>29970.m000990 chromatin binding protein, putative
          Length = 957

 Score =  133 bits (67), Expect = 7e-31
 Identities = 115/131 (87%)
 Strand = Plus / Plus

                                                                       
Query: 4   atggggagctcatcgaaggacgacgctggcagcgatggcgagacctcaagtggagacgct 63
           |||||||||||||||||||||||  | |||||||| ||||| || || || || ||||||
Sbjct: 1   atggggagctcatcgaaggacgattccggcagcgacggcgaaacgtccagcggcgacgct 60

                                                                       
Query: 64  cctccttccaattctggagtcttctccgagggcgagcgcgtcttggcctatcacggtcct 123
           |||||||| ||||||||  ||||||||||||||||||| ||| | || ||||||||||||
Sbjct: 61  cctccttctaattctggcatcttctccgagggcgagcgtgtccttgcttatcacggtcct 120

                      
Query: 124 cgcatctatga 134
           |||||||||||
Sbjct: 121 cgcatctatga 131



 Score =  101 bits (51), Expect = 3e-21
 Identities = 54/55 (98%)
 Strand = Plus / Plus

                                                                  
Query: 259 gttcaaaaagctgagcttcgaaagaaggaatggagatattttgttcattaccttg 313
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 139 gttcaaaaagctgagctccgaaagaaggaatggagatattttgttcattaccttg 193