Jatropha Genome Database
- JcCB0034461.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0034461.20 - phase: 0
(1503 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30128.m008727 pentatricopeptide repeat-containing protein, putative 856 0.0
>30128.m008727 pentatricopeptide repeat-containing protein, putative
Length = 1860
Score = 856 bits (432), Expect = 0.0
Identities = 1193/1444 (82%), Gaps = 2/1444 (0%)
Strand = Plus / Plus
Query: 24 gtggttcacaaaaagtggttggcgaagaacaaaagatgatatcattctagagctgaaaag 83
|||||||||||||||||||||| ||||||||||||| || ||||| ||||||| |||||
Sbjct: 381 gtggttcacaaaaagtggttggagaagaacaaaagaggacatcatcttagagctcaaaag 440
Query: 84 tgcctatgccattactaagttaagaaaatctggatattcgaaacaccagttctacaaaga 143
||||||||| | |||||||||||||||||||||| || ||||| || || ||||||||
Sbjct: 441 tgcctatgctgtatctaagttaagaaaatctggatactcaaaacatcaattgtacaaaga 500
Query: 144 ggccattgagttatacaaggagataagcgctcaaatagcaaatggtgacaaaaattcatt 203
|||||||||||| ||||||||||||||| || || || |||||||| ||||||||| |
Sbjct: 501 ggccattgagttgtacaaggagataagcactatgattgcgaatggtgataaaaattcact 560
Query: 204 gaggaaagcagttacagagaaaatgtactctgaactcaagaatgaaattaaacagcgaga 263
||||||||| ||||| || |||||||| |||||||||||||||||||||||||| ||||
Sbjct: 561 gaggaaagctgttacggaaaaaatgtattctgaactcaagaatgaaattaaacaaagaga 620
Query: 264 gtccaggtggagtaaggtttattgggaaatgattgaaccagtgattaaaataagaacttt 323
||| | |||||||||||||||||||||| || |||||||||||||||| ||| ||||| |
Sbjct: 621 gtctatgtggagtaaggtttattgggaattggttgaaccagtgattaagatacgaactct 680
Query: 324 gcgtgctaggctgattggtgttgaccgaaatgatctcaacaaagttttcatacaactaac 383
||| ||| | |||||||||||||| |||| ||| ||| ||| ||||| ||||| |||||
Sbjct: 681 gcgagctcgactgattggtgttgatcgaagtgacttcagcaaggtttttatacagctaac 740
Query: 384 acttgagtttctgacaaagcagaaatttgaagcctatgattcaaaaggcactatcgttgc 443
|||||||| |||||||||||||| ||||||||||| || ||||||| ||| | |||||
Sbjct: 741 ccttgagttactgacaaagcagaagtttgaagcctacgactcaaaagatactgttgttgc 800
Query: 444 tggagataaaacaaaggagctggctcactcatctaccccaaac-ctgaaaatagagtcgc 502
|||||| |||||||||||||| ||||| ||| || | |||| |||||| | ||| |
Sbjct: 801 tggagacaaaacaaaggagcttgctcattcaacttacttaaactctgaaacaacagt-ac 859
Query: 503 tcccatttctccgaaagctgcatcacatatccccaaattgccgacctatcctgtccatca 562
| |||||| |||| |||||||||||||| | | ||||| || | ||||| ||||| |||
Sbjct: 860 taccatttttccgcaagctgcatcacatgcctctaaattcccaatctatcttgtccctca 919
Query: 563 ccactcgcttctttgctacccaaagccctaacactaattcgtttcctgacaagcgcactg 622
| ||||||| |||| | || |||| | || |||||||||||||||||| | ||||
Sbjct: 920 cgactcgctgctttaccacacaaaacgacaaacttaattcgtttcctgacaaaccgactg 979
Query: 623 ttgcctattacgatgatctagtcaatgctgctggccgtgaaagagactttaacatgcttc 682
|||||| ||||||| ||| |||||||||||||||| ||| ||||||| || | ||||
Sbjct: 980 ctgcctactacgatggtcttgtcaatgctgctggccatgagcgagacttcaagacacttc 1039
Query: 683 actacctcctgaacaagcgtgcaagagataactgctacaactccaccaacaccttcaaat 742
|| ||||||| |||||||||| ||||| | |||| ||| |||||||||| |||||||
Sbjct: 1040 accacctcctcaacaagcgtgtgagagaccattgctttaacaccaccaacacattcaaat 1099
Query: 743 tcatcgccaatacaaataactccctctctatcctggacgatgtcactcaaactctagctc 802
||||| |||| || ||||||| |||||| || |||| ||| ||| |||||| ||||| |
Sbjct: 1100 tcatcaccaacactgataactcactctctgtcttggatgatctcattcaaaccctagccc 1159
Query: 803 gccttgataatggctttgctcgcatgagcgcatacaacacactaattgcacgtctttgca 862
| ||||| || ||| || |||||||||| |||||||||| || |||||||| || ||||
Sbjct: 1160 gtcttgacaaaggcattcctcgcatgagtgcatacaacatgctcattgcacgcctctgca 1219
Query: 863 aactagaccgtatcaaggaatcacttcacattgtggatatcatggcatgtgggcagtatg 922
|||||||||| || |||||||||| ||||||||| ||||||||||| || |||||||
Sbjct: 1220 aactagaccgaattcaggaatcactgcacattgtgcatatcatggcagatgaacagtatg 1279
Query: 923 gcttaaacatttgtagctttaaccctattctgaattctcttacaagcaggaagaaaatgg 982
|||||| || ||||||||| | ||||| |||| |||||| ||| | |||||| ||||
Sbjct: 1280 gcttaagcacgtgtagctttcatcctatactgagttctctcacacagaagaagaagatgg 1339
Query: 983 aggaagcctggcatgttatcgacatgatgaagacagtaggagtttcacctgacataacat 1042
|||| ||||| | || || || ||||||| | | | || |||| |||||| |||||
Sbjct: 1340 aggattcctggaaagtaatagagatgatgagggccatcggggttttgcctgacctaacag 1399
Query: 1043 cattcaattatttgttgacggcatattgttataatgggaatttaatggctgctagtaaaa 1102
|||||||||||||||| || ||||||||||||||||| |||||| ||| |||| ||||
Sbjct: 1400 cattcaattatttgttaactgcatattgttataatggaaatttagtggatgcttgtaagg 1459
Query: 1103 tgatgaagaggattgaggaggaggaattgggtgctgattcacgtacatatgatgcactgg 1162
|||||||||||||||| ||||||| ||| ||||||||| ||||||||||||||||| |||
Sbjct: 1460 tgatgaagaggattgaagaggagggattaggtgctgatgcacgtacatatgatgcattgg 1519
Query: 1163 ttttgggagcatgtagagcagggaaagtggagggagcgctaatggttctgaggaggatag 1222
| ||||| |||||||| ||||||||||||||| || | |||| |||||||| || |
Sbjct: 1520 tgttgggcgcatgtaggacagggaaagtggaggcggctttggtggtgctgaggagaatgg 1579
Query: 1223 aggatgacaaagtgcatgctttgcattctacacatttgcatatcatcagtgcattcttga 1282
|||||| |||||||| ||| ||||||||||| ||||| | |||| |||||| ||||
Sbjct: 1580 tggatgatggagtgcatgtattgtattctacacatgtgcatgttatcaatgcattattga 1639
Query: 1283 agttgggatattatgcacaggcagtgaagtttgtcatgatttatgcagggagagatgcag 1342
| |||||| |||| ||||| |||||||| ||||||| || |||||||||| ||
Sbjct: 1640 ggctgggatgctatgtgcaggctacaaagtttgtgatgatttttggagggagagatatag 1699
Query: 1343 cattagatactgagagttttgggttattggctagtaagttggttaagttagggaggtttg 1402
|||| ||||| |||| ||||||| || ||||||||||| || ||||||| | |||||| |
Sbjct: 1700 catttgatacagagatttttgggatactggctagtaagctgattaagttggagaggttcg 1759
Query: 1403 aggaagctaaggtagttttgaaggaaatgcagggaaggcgtttggtaatgagtgataaat 1462
||||||||||| ||||||||||||||||| | | |||| ||||||||||| |||||||||
Sbjct: 1760 aggaagctaagttagttttgaaggaaatggaagaaaggggtttggtaatgggtgataaat 1819
Query: 1463 tgag 1466
||||
Sbjct: 1820 tgag 1823