Jatropha Genome Database

JcCB0033401.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0033401.20 + phase: 0 /partial
         (528 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30189.m001642 nucleic acid binding protein, putative                  194   4e-49

>30189.m001642 nucleic acid binding protein, putative
          Length = 849

 Score =  194 bits (98), Expect = 4e-49
 Identities = 193/227 (85%)
 Strand = Plus / Plus

                                                                       
Query: 302 gacaaccagataatcagccccaggcagttaatcacaagtgcacagatcctgaatcttgca 361
           ||||||| ||||||||||||||| | | ||||||||||||||| |||||||| || ||||
Sbjct: 263 gacaacctgataatcagccccagccggctaatcacaagtgcacggatcctgactcctgca 322

                                                                       
Query: 362 aacgtgagattattgaagattttgagcatgagaaaccactttggaagcttacatgctatg 421
           ||||| |||||  |||||||||| || | ||||| ||||||||||||||||||||||| |
Sbjct: 323 aacgtcagattgctgaagattttcagaacgagaagccactttggaagcttacatgctacg 382

                                                                       
Query: 422 gtcactcnnnnnnnggtccttgtgacatttttggcgatgtcagttatgaagaactgcggg 481
           | |||||       || ||||||||||||  |||||||||||||||||||||| ||||||
Sbjct: 383 gacactctaaaaatggcccttgtgacattggtggcgatgtcagttatgaagaattgcggg 442

                                                          
Query: 482 ctgttgcatatgatgatgctaagcgtggattaagtttgcagtcaatt 528
           || |||| |||||||| ||||||| |||||| | |||||| ||||||
Sbjct: 443 ctcttgcttatgatgaagctaagcatggattgactttgcaatcaatt 489



 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                    
Query: 5  ctttcaagaaagagctttgcagaaactttcagcgcggaagctgtcaatatggtgaaag 62
          |||||| ||||||  | ||||||||||||||||| |||||||| ||||| ||||||||
Sbjct: 5  ctttcaggaaagaagtgtgcagaaactttcagcgtggaagctgccaatacggtgaaag 62