Jatropha Genome Database
- JcCB0032671.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0032671.10 + phase: 0
(1050 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29657.m000467 U1 small nuclear ribonucleoprotein 70 kD, putative 581 e-165
>29657.m000467 U1 small nuclear ribonucleoprotein 70 kD, putative
Length = 1170
Score = 581 bits (293), Expect = e-165
Identities = 643/759 (84%), Gaps = 3/759 (0%)
Strand = Plus / Plus
Query: 11 ccaatgtaaactcagtgttctacgccgatacatatcatccaattcaagccggaagtatcg 70
|||| |||||||||||||| || || | |||| |||||||| ||||| || ||||| |
Sbjct: 11 ccaaagtaaactcagtgttttatgcaaaatcataccatccaatacaagctggtagtattg 70
Query: 71 acggcactgatattgtcccgcacgacaacgccgtttaccgggctttgttatgctcctccg 130
||||||| |||||| |||| |||||||||||| ||||||| ||||| | || | || |
Sbjct: 71 acggcaccgatattctcccccacgacaacgccatttaccgtgctttcctctgtttttcag 130
Query: 131 ccggactctatgaccccttcggcgaccccaaagtcatcggcgacccttattgcacggttt 190
| |||||||||||||| | ||||| |||||||||||||||||||||| |||||| |||
Sbjct: 131 ctggactctatgacccacttggcgatcccaaagtcatcggcgaccctttttgcactcttt 190
Query: 191 tcgttggccgcctttctcattgcaccactgaagaatcacttcgtaaggctatgagcaaat 250
||||||||||| | ||||||| |||||||||| | | |||| |||||||||||||| |
Sbjct: 191 tcgttggccgcttgtctcattccaccactgaaaacactcttctcaaggctatgagcaagt 250
Query: 251 atggtcgagtgaagaacttgcgcttggtcagggacattgtaactggtgcctcgcgtggct 310
||||| ||| | ||||||||| ||||||||||||||||||||||| || || |||||||
Sbjct: 251 atggtaaagttaggaacttgcgtttggtcagggacattgtaactggcgcttcccgtggct 310
Query: 311 atgcttttgttgaatatgaaactgaaagagagatgcgtcgttcatataaggatgctcatc 370
|||||||||||||||||| |||||||||||||||||| || | || | |||||||||||
Sbjct: 311 atgcttttgttgaatatggaactgaaagagagatgcgccgggcttacatggatgctcatc 370
Query: 371 attcctatattgatgattctgaaataatggttgattacaatagacagcagttgatgcctg 430
|||||| |||||||| ||||||||||| |||||||| || || ||||||||||||||||
Sbjct: 371 attccttcattgatgactctgaaataatagttgattataacaggcagcagttgatgcctg 430
Query: 431 gctggatcccaagaaggttaggaggtggccttggtggcaggaaggaatctggacagcttc 490
| |||||||| |||||||||||||| || |||||||| |||||||| || |||||||||
Sbjct: 431 gatggatcccgagaaggttaggaggagggcttggtggaaggaaggagtccggacagctta 490
Query: 491 ggtttggtgggcgtgaacgacctttccgagctcctttgcaatcaattccattggatgatt 550
||||||||||||| |||||||| || ||||||||| |||||||| ||||||| ||||| |
Sbjct: 491 ggtttggtgggcgagaacgaccatttcgagctcctctgcaatcagttccatttgatgaat 550
Query: 551 tgaagaggcttggcattcctcctccaccagaaggaaggtacatgtcatgttttcaggtcc 610
||||||||||||||||| ||||||||||||||||||| ||||||||| | ||| |||||
Sbjct: 551 tgaagaggcttggcatttctcctccaccagaaggaagatacatgtcacgctttggggtcc 610
Query: 611 catctccccccagaagaaatcgaagctccatagacagagaagaa---agttctcgcatga 667
|||| ||||| |||||||||| || || |||||| | |||||| || || | || ||
Sbjct: 611 catcaccccctagaagaaatcagagttcaatagaccgggaagaaggtagctcgcacagga 670
Query: 668 ggagctctattgacaaggaagaacacagccacagaagcagctctgcggagagggaggaac 727
||||||||||||| ||||||||| || ||||||||||| ||||| |||||||| ||||
Sbjct: 671 ggagctctattgataaggaagaaagtagacacagaagcagatctgcagagagggaagaac 730
Query: 728 gctacaacaaaaggagctcaaggggcaaggaagaacaca 766
|||||| || ||||| | ||| ||||||||||||||
Sbjct: 731 gctacagaaacaggagtcctaggctcaaggaagaacaca 769
Score = 113 bits (57), Expect = 2e-24
Identities = 78/85 (91%)
Strand = Plus / Plus
Query: 681 caaggaagaacacagccacagaagcagctctgcggagagggaggaacgctacaacaaaag 740
|||||||||||||||||| || |||||||||| ||||||||| |||||| ||| ||||||
Sbjct: 756 caaggaagaacacagccataggagcagctctgtggagagggaagaacgccacagcaaaag 815
Query: 741 gagctcaaggggcaaggaagaacac 765
|||||| ||||||||||||||||||
Sbjct: 816 gagctctaggggcaaggaagaacac 840
Score = 73.8 bits (37), Expect = 2e-12
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 951 aagttctaaggataggaaagaaggctctcacaagcgccacagacatgatagtaggtctga 1010
|||||||| |||||| ||||||| |||||||||| | |||| |||||||||||||| ||
Sbjct: 1059 aagttctagggatagaaaagaagcctctcacaagggtcacaagcatgatagtaggtccga 1118
Query: 1011 cagacacaa 1019
|||||||||
Sbjct: 1119 cagacacaa 1127