Jatropha Genome Database

JcCB0031871.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0031871.10 - phase: 0 /partial
         (241 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004615 UDP-sugar transporter, putative                         129   8e-30
29927.m000597 conserved hypothetical protein                           84   4e-16

>29848.m004615 UDP-sugar transporter, putative
          Length = 1071

 Score =  129 bits (65), Expect = 8e-30
 Identities = 122/141 (86%)
 Strand = Plus / Plus

                                                                       
Query: 90  aggagatgaaaagcttttcagaggatccgctatgactaaaagaggagcctatgctgctat 149
           ||||||||| ||| |||| || |||||||| ||||||||||||||||| || ||||| ||
Sbjct: 84  aggagatgataagatttttaggggatccgccatgactaaaagaggagcttacgctgccat 143

                                                                       
Query: 150 ctcttacatgtcttgtgcagtgctcttggttatgttcaacaaagcagctctttcttctta 209
            ||||||||||||||||| ||||| ||||| || |||||||||||||||||||| |||| 
Sbjct: 144 atcttacatgtcttgtgctgtgcttttggtaattttcaacaaagcagctctttcgtcttt 203

                                
Query: 210 taaattccctagcgcaaatgt 230
           ||| || ||||| || |||||
Sbjct: 204 taactttcctagtgcgaatgt 224


>29927.m000597 conserved hypothetical protein
          Length = 492

 Score = 83.8 bits (42), Expect = 4e-16
 Identities = 78/90 (86%)
 Strand = Plus / Plus

                                                                       
Query: 120 tatgactaaaagaggagcctatgctgctatctcttacatgtcttgtgcagtgctcttggt 179
           |||||| ||||||||||| |||||||| || ||||| ||| || ||||||| ||||||||
Sbjct: 66  tatgacaaaaagaggagcttatgctgccatttcttatatggctagtgcagttctcttggt 125

                                         
Query: 180 tatgttcaacaaagcagctctttcttctta 209
            ||||| |||||||| || |||||||||||
Sbjct: 126 aatgtttaacaaagctgccctttcttctta 155