Jatropha Genome Database

JcCB0030711.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0030711.20 - phase: 0 
         (564 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29640.m000410 conserved hypothetical protein                          184   4e-46

>29640.m000410 conserved hypothetical protein
          Length = 579

 Score =  184 bits (93), Expect = 4e-46
 Identities = 200/235 (85%), Gaps = 3/235 (1%)
 Strand = Plus / Plus

                                                                       
Query: 245 cctccgaggagcctcccaaacgcaagttccgttatactccaattgtggtactagaagaag 304
           |||||||||||||||||||||| ||||||||||||||||| ||||  ||||| |||||| 
Sbjct: 263 cctccgaggagcctcccaaacggaagttccgttatactccgattgccgtacttgaagaaa 322

                                                                       
Query: 305 aacagagaaaggcagctaaacaggttgatcatgaagctaagacagatggaactaaccaat 364
               || |||||||||| || |||||||| |||||| |||  ||  ||| ||| ||||||
Sbjct: 323 g---gaaaaaggcagctgaaaaggttgataatgaaggtaatgcatctgggactgaccaat 379

                                                                       
Query: 365 tcacagcattgcatccttccaagaatgatgaactaaataatgacactgctttgaagacag 424
            |||||||||| |  || ||||||||||||||||||||| |||| ||| |||||||||||
Sbjct: 380 ccacagcattggaaactcccaagaatgatgaactaaatagtgactctgatttgaagacag 439

                                                                  
Query: 425 aaacccaggattccaacgtgagtaatttggatttggatttgtgcttgaaaggcca 479
           ||| ||||||||| ||  |||||||||||||||||| ||||||| ||||||||||
Sbjct: 440 aaaaccaggattcaaatatgagtaatttggatttgggtttgtgcctgaaaggcca 494



 Score = 75.8 bits (38), Expect = 3e-13
 Identities = 95/114 (83%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaaggagtggggtctcgactgggccgtgcctcgtctcgttacgggccatcggctacg 60
           |||||||||| ||||||  || ||||||| || || || || || || ||||| || || 
Sbjct: 1   atggaaggaggggggtcgagattgggccgcgcatcatcgcgatatggcccatcagcgacc 60

                                                                 
Query: 61  gccactgtctttaacggcccggtgaggaagtggaagaagaagtgggttcatgtg 114
           ||| | || |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 61  gccgccgtgtttaacggtccggtgaggaagtggaagaagaagtgggtccatgtg 114



 Score = 61.9 bits (31), Expect = 4e-09
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 196 tctcgtctccttctttgtcggtggacccctctctc 230
           ||||||||||| |||||||||||||||||||||||
Sbjct: 193 tctcgtctcctcctttgtcggtggacccctctctc 227