Jatropha Genome Database
- JcCB0028581.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0028581.20 - phase: 0 /partial
(852 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30026.m001452 wd40 protein, putative 109 3e-23
29482.m000171 Cellulose synthase A catalytic subunit 3 [UDP-form... 103 2e-21
28093.m000117 Cellulose synthase A catalytic subunit 6 [UDP-form... 96 4e-19
29606.m000101 Cellulose synthase A catalytic subunit 6 [UDP-form... 92 6e-18
29761.m000416 Cellulose synthase A catalytic subunit 6 [UDP-form... 76 4e-13
29863.m001055 Cellulose synthase A catalytic subunit 6 [UDP-form... 60 2e-08
29637.m000754 Cellulose synthase A catalytic subunit 6 [UDP-form... 54 1e-06
30068.m002658 cellulose synthase, putative 52 6e-06
>30026.m001452 wd40 protein, putative
Length = 4377
Score = 109 bits (55), Expect = 3e-23
Identities = 112/131 (85%)
Strand = Plus / Plus
Query: 13 aggcctgcatttaaaggttctgcgcccatcaatctttccgatcgtctacatcaggtcctt 72
||||||||||| ||||| ||||| ||||||||||| || ||| | | |||||||| ||
Sbjct: 3529 aggcctgcattcaaagggtctgcacccatcaatctgtctgatagattgcatcaggttctc 3588
Query: 73 cggtgggctcttggatctgttgaaatatttttaagcaggcactgtcctctgtggtatggt 132
|||||||||||||| ||||| ||||| || || ||||| ||||||||||| ||||||||
Sbjct: 3589 cggtgggctcttgggtctgtggaaattttcttgagcagacactgtcctctctggtatggg 3648
Query: 133 tatggaggagg 143
|||||||||||
Sbjct: 3649 tatggaggagg 3659
>29482.m000171 Cellulose synthase A catalytic subunit 3 [UDP-forming],
putative
Length = 2934
Score = 103 bits (52), Expect = 2e-21
Identities = 262/332 (78%)
Strand = Plus / Plus
Query: 343 agatggagtggagttgggcttgatgattggtggagaaacgagcaattttgggtgattgga 402
|||||||||||||| | |||| || ||||||||||| |||||||| ||||| |||||
Sbjct: 2425 agatggagtggagtgagcattgaagaatggtggagaaatgagcaattctgggtcattggt 2484
Query: 403 ggagtgtcagcacatctatttgctgttttccagggtctgttaaaggttctggctggtgtt 462
|| | ||||| || || ||||||||| | || ||||| | |||||| | |||||| ||
Sbjct: 2485 ggtatatcagctcacctctttgctgttgtgcaaggtcttctgaaggttttagctggtatt 2544
Query: 463 gatacaaacttcactgtgacatcaaaagcaggagacgatgaagagttttcggagctatat 522
|| ||||||||||| || || ||||| ||| || ||||| || ||| | || ||||||
Sbjct: 2545 gacacaaacttcacagtcacttcaaaggcaactgatgatgaggattttgctgaactatat 2604
Query: 523 gcatttaaatggacaaccttactcattccaccaacaacgttgctgataataaatctgata 582
|||||||||||||||||| | || || ||||| || || | | || || || || ||
Sbjct: 2605 gcatttaaatggacaaccctcctgataccaccgactaccatcttaatcatcaaccttgta 2664
Query: 583 ggagtagttgctggcgtctcaaatgcaataaataatgggtacgagtcgtgggggcctctg 642
||||| |||||||| |||||| | || ||||| ||||| ||| | || ||||| |||||
Sbjct: 2665 ggagttgttgctggagtctcagacgctataaacaatggataccaatcatggggccctcta 2724
Query: 643 tttggtaagcttttctttgcattctgggtgat 674
||||| ||||| |||||||| |||||||||||
Sbjct: 2725 tttgggaagctcttctttgccttctgggtgat 2756
>28093.m000117 Cellulose synthase A catalytic subunit 6 [UDP-forming],
putative
Length = 2487
Score = 95.6 bits (48), Expect = 4e-19
Identities = 120/144 (83%)
Strand = Plus / Plus
Query: 350 gtggagttgggcttgatgattggtggagaaacgagcaattttgggtgattggaggagtgt 409
|||| |||||| | ||||| ||||||||||| ||||| ||||||||||||||||| || |
Sbjct: 1985 gtggcgttgggatagatgactggtggagaaatgagcagttttgggtgattggaggtgtct 2044
Query: 410 cagcacatctatttgctgttttccagggtctgttaaaggttctggctggtgttgatacaa 469
|| | ||||| |||||| | ||||||||| || | ||||| ||||||| || |||||
Sbjct: 2045 catctcatctttttgctctcttccagggtttgctcaaggtgttggctggggtcagtacaa 2104
Query: 470 acttcactgtgacatcaaaagcag 493
|||||||||| || ||||||||||
Sbjct: 2105 acttcactgtcacgtcaaaagcag 2128
Score = 75.8 bits (38), Expect = 4e-13
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 14 ggcctgcatttaaaggttctgcgcccatcaatctttccgatcgtctacatcaggtccttc 73
||||||||||||| || || || || || ||||| || ||||||||||| ||||| || |
Sbjct: 1649 ggcctgcatttaaggggtcagctcctattaatctgtcagatcgtctacaccaggttctcc 1708
Query: 74 ggtgggctcttggatctgttgaaatatttttaagcaggcactgtcctctgtggtatggtt 133
| ||||| ||||| ||||||||||| || || ||||| || |||||| | |||||||| |
Sbjct: 1709 gttgggcacttgggtctgttgaaattttcttgagcagacattgtcctatttggtatggct 1768
Query: 134 atggaggaggtttgaagtggct 155
|||| || || ||||| |||||
Sbjct: 1769 atggtggtggattgaaatggct 1790
>29606.m000101 Cellulose synthase A catalytic subunit 6 [UDP-forming],
putative
Length = 3258
Score = 91.7 bits (46), Expect = 6e-18
Identities = 118/142 (83%)
Strand = Plus / Plus
Query: 335 tggaaatgagatggagtggagttgggcttgatgattggtggagaaacgagcaattttggg 394
|||| |||||||||||||| ||||| | ||||| |||||||||||||| || |||||||
Sbjct: 2738 tggagatgagatggagtggtgttggaatcgatgagtggtggagaaacgaacagttttggg 2797
Query: 395 tgattggaggagtgtcagcacatctatttgctgttttccagggtctgttaaaggttctgg 454
| ||||| || || || || ||||| |||||||||||||| || ||| | || ||||| |
Sbjct: 2798 ttattggtggtgtttctgcccatctctttgctgttttccaaggcctgctcaaagttcttg 2857
Query: 455 ctggtgttgatacaaacttcac 476
|||| |||| |||||||||||
Sbjct: 2858 ctggcattgacacaaacttcac 2879
Score = 54.0 bits (27), Expect = 1e-06
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 626 agtcgtgggggcctctgtttggtaagcttttctttgcattctgggtgatagttcacctct 685
|||| ||||| ||||| ||||| || ||||||||||| || |||||||| | || || |
Sbjct: 3032 agtcatggggtcctctctttggcaaacttttctttgcgttttgggtgattatccatcttt 3091
Query: 686 atcctttcctaaagggtctgctgggtcgacagaac 720
|||||||||| || || ||| ||||||| ||||||
Sbjct: 3092 atcctttcctcaaaggactgatgggtcgtcagaac 3126
>29761.m000416 Cellulose synthase A catalytic subunit 6 [UDP-forming],
putative
Length = 2700
Score = 75.8 bits (38), Expect = 4e-13
Identities = 98/118 (83%)
Strand = Plus / Plus
Query: 17 ctgcatttaaaggttctgcgcccatcaatctttccgatcgtctacatcaggtccttcggt 76
|||| |||||||| ||||| |||||||||||||| ||||||||| |||| || |||||||
Sbjct: 2375 ctgcctttaaaggatctgctcccatcaatctttctgatcgtctaaatcaagtgcttcggt 2434
Query: 77 gggctcttggatctgttgaaatatttttaagcaggcactgtcctctgtggtatggtta 134
||||| | || || |||||||| |||| ||| | ||||| || | |||||||||||
Sbjct: 2435 gggctttaggttcagttgaaattctttttagccgtcactgccccatttggtatggtta 2492
>29863.m001055 Cellulose synthase A catalytic subunit 6 [UDP-forming],
putative
Length = 3288
Score = 60.0 bits (30), Expect = 2e-08
Identities = 123/154 (79%)
Strand = Plus / Plus
Query: 365 atgattggtggagaaacgagcaattttgggtgattggaggagtgtcagcacatctatttg 424
|||| ||||||||||| ||||| |||||||||||||| || |||| | || || ||||
Sbjct: 2801 atgactggtggagaaatgagcagttttgggtgattggtggcacgtcatcccacctgtttg 2860
Query: 425 ctgttttccagggtctgttaaaggttctggctggtgttgatacaaacttcactgtgacat 484
|| |||||||||||||| | ||||| | || |||||| || | ||||| || || |
Sbjct: 2861 ctcttttccagggtctgctcaaggtattagcaggtgttagcaccagtttcacggttactt 2920
Query: 485 caaaagcaggagacgatgaagagttttcggagct 518
||||||||||||| |||| ||| ||||| |||||
Sbjct: 2921 caaaagcaggagatgatggagaattttcagagct 2954
>29637.m000754 Cellulose synthase A catalytic subunit 6 [UDP-forming],
putative
Length = 3135
Score = 54.0 bits (27), Expect = 1e-06
Identities = 114/143 (79%)
Strand = Plus / Plus
Query: 379 aacgagcaattttgggtgattggaggagtgtcagcacatctatttgctgttttccagggt 438
|||||||| || ||||| ||||| || || ||||||||||| ||||| || ||||| ||
Sbjct: 2662 aacgagcagttctgggtcattggtggtgtctcagcacatctttttgcagtcttccaaggc 2721
Query: 439 ctgttaaaggttctggctggtgttgatacaaacttcactgtgacatcaaaagcaggagac 498
|| | ||||| || | ||| ||||| ||||||||||| || ||| | ||||||| |||
Sbjct: 2722 ctcctcaaggtccttggtggagttgacacaaacttcaccgtcacagccaaagcagcagat 2781
Query: 499 gatgaagagttttcggagctata 521
|||| ||| ||| |||||||||
Sbjct: 2782 gatgcagaatttggggagctata 2804
>30068.m002658 cellulose synthase, putative
Length = 3261
Score = 52.0 bits (26), Expect = 6e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 367 gattggtggagaaacgagcaattttgggtgattggagg 404
|||||||||||||| |||||||| ||| ||||||||||
Sbjct: 2776 gattggtggagaaatgagcaattctggttgattggagg 2813