Jatropha Genome Database
- JcCB0028581.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0028581.10 + phase: 2 /pseudo/partial
(970 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30170.m014251 conserved hypothetical protein 482 e-135
>30170.m014251 conserved hypothetical protein
Length = 2229
Score = 482 bits (243), Expect = e-135
Identities = 455/528 (86%)
Strand = Plus / Plus
Query: 437 cagaggatctttttcattgataaaagagtcccagagctggaatctgaaaagaaagttgct 496
|||||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct: 1693 cagaggatttttttcattgataaaagagtcccagagctagaagcagaaaagaaagttgct 1752
Query: 497 gcttcaacaagaaatttcaaggaagctgcacgaatagctgctgaggcaaagtcattgtat 556
||| | ||||||||||||||||||||||| | |||||||||||||||||||||||| |
Sbjct: 1753 gctgcggcaagaaatttcaaggaagctgcaaggatagctgctgaggcaaagtcattgagt 1812
Query: 557 gttgagaaggatggtgtgcagattgacttggaaagaactacagcagagctggagaagtta 616
|||||||||||||||||||||||||||||||||| | | || |||||||||||||||
Sbjct: 1813 gttgagaaggatggtgtgcagattgacttggaaaaagcgactttggagctggagaagtta 1872
Query: 617 gaggaagatatgaaaaatactgttagtagattgctggatactgaacacctgatttcatcc 676
||| ||||||| |||| |||||||| ||||||| |||||||||||| ||||||||||||
Sbjct: 1873 gagaaagatatcaaaagcactgttagcagattgcaggatactgaacaactgatttcatcc 1932
Query: 677 aaggaaaaagaggttgcaatggctagatttcagaggttacttttaattgctggcgctgct 736
|||||||| |||||||||||||||||||| ||||| ||||| || |||||||| ||||||
Sbjct: 1933 aaggaaaaggaggttgcaatggctagattccagagcttactcttgattgctggtgctgct 1992
Query: 737 acagcagaaagggtttcggctttagagctcggtgactctgaagaagccaacctcctactt 796
||||| ||||| || | ||||| ||||| |||||| | |||||||||||||| |||||
Sbjct: 1993 acagctgaaagatttgctgctttggagctgggtgacacagaagaagccaaccttttactt 2052
Query: 797 gcagaggcagaagcagcaaatgctgaagcnnnnnnncttcaacctatatataatttcaac 856
||||| || ||||| |||||||| ||||| |||||||| ||||| ||||||||
Sbjct: 2053 gcagaagctgaagctgcaaatgccgaagcaaaaaaacttcaaccaatatacaatttcaat 2112
Query: 857 aaggaacagttcccaaatttaccaaagcatttcatctccatggaacttgtatttaatctt 916
||||| ||||| ||||||||||||| ||||||||||| ||||||||||||| ||| |||
Sbjct: 2113 gaggaagagttctcaaatttaccaaaacatttcatctctatggaacttgtatctaagctt 2172
Query: 917 ggcaggaagcagttagcagatttagcggcatctgttggtatttctgca 964
|| ||||||||||| ||| | ||||||||||| | | ||||||||
Sbjct: 2173 ggacggaagcagttaatagaactggcggcatctgtggatgtttctgca 2220
Score = 252 bits (127), Expect = 3e-66
Identities = 289/343 (84%)
Strand = Plus / Plus
Query: 1 aagctccaccgctctcgtcagttagctgcctctgtttcttcagctcgcaaggatgccatc 60
|||||||| | |||||| |||| |||||||||||| || | ||| | ||||||||||||
Sbjct: 613 aagctccagcactctcgccagtcagctgcctctgtctccgctgctaggaaggatgccatc 672
Query: 61 aggaggagaagagcagctactgaggatctcaattcagcctctgccaagcacagggacctc 120
| |||||||| |||| || | ||||||||||| || |||||||| || || ||||||
Sbjct: 673 actaggagaaggaaagctgctcaagatctcaattctgcttctgccaaccatagagacctc 732
Query: 121 gaattacagttggaggctgcctgtgaagccgaagatttcgaggccgccgaaaggattagc 180
|||||||||||||| || ||||||||| ||||||||||||| || ||| |||||||||||
Sbjct: 733 gaattacagttggaagcggcctgtgaatccgaagatttcgatgctgcccaaaggattagc 792
Query: 181 gacaggcttgccaccactgacaaggagaggcaagctcttctctctgctcttagagacgct 240
|| | ||||| || |||| |||||||||| | ||||||| ||||||||| | ||||
Sbjct: 793 gattgccttgctgcctctgataaggagaggctacttcttctcactgctcttaaacacgcc 852
Query: 241 gaagcccattgtgatgccatcgattctaagatgcacgatgttctgaactctcagattctt 300
|||||| | |||||| || ||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 853 gaagcctactgtgataccctcgattctaagatgcacgatgttctcaactctcagattgtt 912
Query: 301 gctgagcaagaatgcgcaactgttctctctaattttgccaagg 343
|||||||| |||||||| || |||||||||| ||||||||||
Sbjct: 913 gctgagcaggaatgcgctgctcttctctctaagtttgccaagg 955
Score = 69.9 bits (35), Expect = 3e-11
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 343 ggaagacaaagtaaggcttgcaaaggccgaagagaaacttattgaggatgtccgaatgct 402
|||||||||||| ||||| || ||| | ||||||||||||||||||||||| | ||||||
Sbjct: 1545 ggaagacaaagtgaggctggctaagactgaagagaaacttattgaggatgttcaaatgct 1604
Query: 403 cca 405
|||
Sbjct: 1605 cca 1607