Jatropha Genome Database

JcCB0028391.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0028391.20 + phase: 0 /partial
         (656 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008896 conserved hypothetical protein                          254   6e-67

>30174.m008896 conserved hypothetical protein
          Length = 1893

 Score =  254 bits (128), Expect = 6e-67
 Identities = 333/400 (83%), Gaps = 1/400 (0%)
 Strand = Plus / Plus

                                                                       
Query: 254 caccggcttatattaatcccgagccccatatatcctcccaattctatacattcaacgctg 313
           |||| ||||| ||||| || |||||||| || || || || ||||| || |||||||| |
Sbjct: 254 cacccgcttacattaacccggagccccacatctcttctcagttctacactttcaacgccg 313

                                                                       
Query: 314 agtctcactctctcatgattcgctgtattctagagcaccgcttagctactcccgacgaga 373
           | |||||| |||||||||||||||| ||||| ||||||||  | ||||||||||||||||
Sbjct: 314 actctcacgctctcatgattcgctgcattctcgagcaccgtctcgctactcccgacgaga 373

                                                                       
Query: 374 tccgtgctgccacgccgggctccgtccttaaatcgtggcgcgcagtctggaaggaccgca 433
           ||||  | || || ||  |||||||||| |||||||||||  | || ||||| |||||||
Sbjct: 374 tccgcaccgctactcctcgctccgtcctcaaatcgtggcggtccgtttggaaagaccgca 433

                                                                       
Query: 434 acgaggacactgcctatgtgactggatggaagcgtatccaagagaagctcacggctcagg 493
           |||| || ||||| ||  | || || ||||| || |||||||| ||  | || ||||| |
Sbjct: 434 acgaagatactgcttacatcacgggttggaaacgaatccaagaaaaattaaccgctcatg 493

                                                                       
Query: 494 tggaccctgcatccggtaatgaatttctttgcttcaagaacaattctcaacaatttgttt 553
           | |||||| | || |||||||||||||| ||||||||||| ||||| ||||||||||| |
Sbjct: 494 tcgaccctacttctggtaatgaatttctctgcttcaagaataattcgcaacaatttgtgt 553

                                                                       
Query: 554 ctcatattaatcaatggcaagatattgtcatgagctttcatggggatgctgatttaaagc 613
           |||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |
Sbjct: 554 ctcatattaatcaatggcaagatattgttatgagttttcatggtgatgctgatttaaaac 613

                                                   
Query: 614 acctagggcttagagaaaccatagagagaa-taaacaagt 652
           |  ||||| | |||||||| || ||||||| |||||||||
Sbjct: 614 atttagggttaagagaaacaatcgagagaattaaacaagt 653