Jatropha Genome Database

JcCB0028271.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0028271.10 - phase: 0 /pseudo/partial
         (531 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014390 brca1 interacting protein helicase 1 brip1, putative    226   1e-58

>30170.m014390 brca1 interacting protein helicase 1 brip1, putative
          Length = 3747

 Score =  226 bits (114), Expect = 1e-58
 Identities = 291/350 (83%)
 Strand = Plus / Plus

                                                                       
Query: 31  aatccaaatcctaaagcaaaaaacgtataccatattggaggaatccaagtggaatttccg 90
           |||||||| |||||| | ||||| | |||||| |||||||| |||||||||||||| |||
Sbjct: 28  aatccaaaccctaaatccaaaaatgcataccacattggaggtatccaagtggaattcccg 87

                                                                       
Query: 91  tatcaaccgtatggaacgcagctcgcattcatggggagggtcatttcgactctcgataga 150
           || || ||||||||  | ||||| || |||||||| || || ||||| || || ||| ||
Sbjct: 88  taccagccgtatggtcctcagctggctttcatgggtagagtgatttccacgctggatcga 147

                                                                       
Query: 151 gcccaaagagaaggccattgccatgcgctccttgagtcaccgaccggaactgggaaatca 210
           |||  |||||| ||||||||||||||||| || |||||||| ||||| ||||| ||||||
Sbjct: 148 gccgtaagagacggccattgccatgcgctactcgagtcacccaccggtactggaaaatca 207

                                                                       
Query: 211 ctttcgcttctctgttccactcttgcgtggcaacagaactataagtttaagtaccagcat 270
           || |||||||| ||||||||||| |||||||||||||| ||||||| |||| | ||||  
Sbjct: 208 ctctcgcttctttgttccactctcgcgtggcaacagaattataagtctaagcaacagctc 267

                                                                       
Query: 271 gccaatctgactccgtcaaagcccaatcccgaggcaatgaccgatcctctgggtcatggt 330
           ||  |||| ||||  || || || |||||||||||||| || |||||| | |||||||| 
Sbjct: 268 gcggatcttactcaatccaaacctaatcccgaggcaatcactgatcctataggtcatggc 327

                                                             
Query: 331 ggaggatttattccagagacacaaccttcaagcattccaccttctggaaa 380
           || ||||||||||| || || ||||| ||||| ||||||||||| |||||
Sbjct: 328 ggtggatttattcctgaaacgcaaccctcaagtattccaccttcaggaaa 377