Jatropha Genome Database

JcCB0026071.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0026071.10 - phase: 0 
         (516 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29763.m000188 ribulose-bisphosphate carboxylase, putative             153   1e-36
29763.m000189 conserved hypothetical protein                           96   2e-19

>29763.m000188 ribulose-bisphosphate carboxylase, putative
          Length = 285

 Score =  153 bits (77), Expect = 1e-36
 Identities = 146/169 (86%)
 Strand = Plus / Plus

                                                                       
Query: 298 gtgcgtagagagaatagcagaatgccaggatactatgatgggagatattggacattgtgg 357
           |||| ||| ||||||||||| |||||||||||||||||||| || || |||||| | |||
Sbjct: 58  gtgcatagggagaatagcaggatgccaggatactatgatggaaggtactggacactatgg 117

                                                                       
Query: 358 aagctcccaatgtttggttgcaatgactctgctcaggttctaaatgaaatgcatgaatgc 417
           |||||||| |||||||| ||||| |||||  |||| || || ||||||||  | ||||||
Sbjct: 118 aagctccccatgtttggatgcaacgactcatctcaagtgcttaatgaaatcaacgaatgc 177

                                                            
Query: 418 aaaaaagcatacccaaatgcttatatacgctgcttggcatttgacaaca 466
           ||||| |||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct: 178 aaaaaggcatacccaaatgcctatatccgctgcttggcatttgataaca 226


>29763.m000189 conserved hypothetical protein
          Length = 246

 Score = 95.6 bits (48), Expect = 2e-19
 Identities = 180/222 (81%), Gaps = 4/222 (1%)
 Strand = Plus / Plus

                                                                       
Query: 12  tgccggaatccttacatctgcggttgctggatctggatatcaaggcctaaaagccaactc 71
           |||||||||| ||||| || |||||||||||||||| || || ||| | |||||||||||
Sbjct: 6   tgccggaatctttacagctccggttgctggatctggttaccatggcttgaaagccaactc 65

                                                                       
Query: 72  agcaaaacagctgttccctgctaaggattcta---tttcatggaacagcaaaactgtctc 128
           | |||||||  |||||||||| || ||||||    || |||||| | | |||||||||||
Sbjct: 66  aacaaaacaagtgttccctgccaaagattcttctgttgcatggagccgaaaaactgtctc 125

                                                                       
Query: 129 taacggttccagaattcattgcatgaagacatggaatccaatcaataacaagaagtttga 188
            || |||||||  | | | ||||||||||||||||| ||||| || |||| |||| ||||
Sbjct: 126 caatggttccaagacttactgcatgaagacatggaacccaattaacaacacgaag-ttga 184

                                                     
Query: 189 gacactttcttaccttcctccactctccgatgactcgattgc 230
           ||| || || ||||| || ||||| || ||||| || |||||
Sbjct: 185 gactctgtcctacctcccaccactttctgatgattccattgc 226