Jatropha Genome Database

JcCB0025751.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0025751.10 - phase: 0 /partial
         (573 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30156.m001758 DNA polymerase delta catalytic subunit, putative        392   e-109

>30156.m001758 DNA polymerase delta catalytic subunit, putative
          Length = 3150

 Score =  392 bits (198), Expect = e-109
 Identities = 273/298 (91%)
 Strand = Plus / Plus

                                                                        
Query: 1    agagatgctgccactgctccaaatgttggggatcgagtaccctatgtcattataaaagct 60
            ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 2524 agagatgctgccactgcaccaaatgttggagatcgagtaccttatgtcattataaaagct 2583

                                                                        
Query: 61   gcaaaaggtgctaaggcttacgagagatcagaggatccgatctatgttctggaaaataac 120
            |||||||||||||||||||| |||||||| |||||||| ||||| || || |||||||||
Sbjct: 2584 gcaaaaggtgctaaggcttatgagagatctgaggatcctatctacgtcctagaaaataac 2643

                                                                        
Query: 121  ataccaatagatcctcaatattatcttgaaaaccaaattagcaagcctcttttaagaatt 180
            ||||| ||||| ||||||||||||||||| || |||||||||||||| ||| ||||||||
Sbjct: 2644 ataccgatagaccctcaatattatcttgagaatcaaattagcaagccacttctaagaatt 2703

                                                                        
Query: 181  ttcgagcctattttgaagaatgccagcaaggaactacttcatggcagtcatacaagatct 240
            || ||||| |||||||||||||||||||| ||||| || ||||| |||||||||||||||
Sbjct: 2704 tttgagcccattttgaagaatgccagcaaagaacttctccatggaagtcatacaagatct 2763

                                                                      
Query: 241  atttccatctccactccttcaactggtggcattatgaagtttgctaagaaacaactca 298
            |||||||||||||||||||||| ||||||||| ||||| |||||||||||||| ||||
Sbjct: 2764 atttccatctccactccttcaaatggtggcatcatgaaatttgctaagaaacagctca 2821



 Score =  349 bits (176), Expect = 1e-95
 Identities = 221/236 (93%)
 Strand = Plus / Plus

                                                                        
Query: 334  gatcgaactctctgctcgcactgcaaaggaagagaagcagagctatactgcaaaacagtt 393
            |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2908 gatcgaaccctctgctcacactgcaaaggaagagaagcagagctatactgcaaaacagtt 2967

                                                                        
Query: 394  tctcaagtgtctgagctagagttgctttttgggaggctgtggactcagtgccaagagtgc 453
            |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct: 2968 tctcaagtgtctgagctagagttgctatttgggaggctgtggacacaatgccaagagtgc 3027

                                                                        
Query: 454  caaggctcacttcatcaggatgttctttgcacaagtcgggattgcccaatattttatcga 513
            |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 3028 caaggctctcttcatcaggatgtgctttgcactagtcgggattgcccaatattttatcga 3087

                                                                    
Query: 514  agaaaaaaggcacagaaagacatggcagaagccaagaggcagttggataggtggaa 569
            ||||| ||||| || ||||||||||| ||||||||| ||||||| ||||| |||||
Sbjct: 3088 agaaagaaggcgcaaaaagacatggctgaagccaagcggcagttagatagatggaa 3143