Jatropha Genome Database

JcCB0025551.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0025551.10 + phase: 0 
         (627 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29739.m003771 Auxin-binding protein ABP19a precursor, putative        133   1e-30

>29739.m003771 Auxin-binding protein ABP19a precursor, putative
          Length = 627

 Score =  133 bits (67), Expect = 1e-30
 Identities = 264/329 (80%), Gaps = 3/329 (0%)
 Strand = Plus / Plus

                                                                       
Query: 188 ttataaaagctgctgttacaccagcatttgctgcacaatttcctggggtcaacgggcttg 247
           |||| ||||||| ||||||||| ||||| |  |  ||||| |||||  | ||||||||||
Sbjct: 185 ttatcaaagctggtgttacacctgcattcgtcgaccaattccctggtttaaacgggcttg 244

                                                                       
Query: 248 gaatttccatggctcgtttagacttggcccctggaggagttattccgttccatacacatc 307
           ||||||| ||||||||||||||||||   ||||| |||||||||||| | ||||||||||
Sbjct: 245 gaatttctatggctcgtttagacttgcaacctggtggagttattccgatgcatacacatc 304

                                                                       
Query: 308 caggagcatcagaagtgctagttgtaatacaagggacaatttgtgctggttttgtttcct 367
           | | ||| |||||||| |||   |||||   |||  |||| || || || ||| |||| |
Sbjct: 305 ctgcagcttcagaagtactaaccgtaatttcaggatcaatctgcgcagggtttatttctt 364

                                                                       
Query: 368 ctgc---taataaagttttctttcaaacacttaaaaagggagatattatggtatttccac 424
           |  |   |||||||||||||||  |||  ||| | ||||||||||||||| |||| ||||
Sbjct: 365 catcagataataaagttttcttcaaaaatcttgataagggagatattatgatattcccac 424

                                                                       
Query: 425 aaggtttattgcattttcaaataaatggaggtgggtctcctgctcttgcatttgttagct 484
           |||| ||| ||||||| |||||||||  ||| |||  | |||||||||||||||| ||||
Sbjct: 425 aaggattactgcatttccaaataaattcaggagggagttctgctcttgcatttgtaagct 484

                                        
Query: 485 ttagcagtccatttccaggtcttcagatt 513
           | || ||||||   |||||||||||||||
Sbjct: 485 tcagtagtccaagaccaggtcttcagatt 513