Jatropha Genome Database

JcCB0020561.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0020561.10 + phase: 0 
         (477 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m013843 Dehydration-responsive element-binding protein 1B,...   222   1e-57
28718.m000038 DNA binding protein, putative                            88   6e-17

>30170.m013843 Dehydration-responsive element-binding protein 1B,
           putative
          Length = 489

 Score =  222 bits (112), Expect = 1e-57
 Identities = 246/290 (84%), Gaps = 3/290 (1%)
 Strand = Plus / Plus

                                                                       
Query: 82  caacaagaaaagccttacagaggtataaggatgaggaagtggggaaagtgggtcgctgaa 141
           |||||||| |||||||| ||||| ||||||||||| |||||||| |||||||| ||||| 
Sbjct: 100 caacaagacaagccttatagaggaataaggatgagaaagtgggggaagtgggttgctgag 159

                                                                       
Query: 142 attagagaacccaacaaacgttctagaatttggcttggctcttattctacccctatcgcc 201
           ||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||| || 
Sbjct: 160 attagagaacccaacaagcgttcgagaatttggcttggttcttattcaacccctatagct 219

                                                                       
Query: 202 gccgcgcgtgcatatgacaccgccgttttctaccttagaggcccttccgctagacttaat 261
           || || ||||| ||||||||||| ||||||||||||||||| ||||| ||||| ||||||
Sbjct: 220 gctgctcgtgcttatgacaccgcagttttctaccttagaggtccttctgctaggcttaat 279

                                                                       
Query: 262 ttccccgatttgatattccgcgatgacgaacagacaagagacatgtctgctgcttctata 321
           || || |||||||||| ||  || ||||  | |    | || ||||||||||||||||||
Sbjct: 280 tttcctgatttgatataccaggaagacggtctg---ggtgatatgtctgctgcttctata 336

                                                             
Query: 322 cgcaaaaaagcaaccgaagttggggctcaggtggacgccctgcaacaaac 371
           ||||| ||||| || |||||||| || || || || ||||| ||||||||
Sbjct: 337 cgcaagaaagctactgaagttggagcccaagtcgatgcccttcaacaaac 386



 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                 
Query: 424 gagaaacctgacttgaaccagtatccgaacccggaaaattctgatgaagagtag 477
           ||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||
Sbjct: 436 gagaaacctgacttgaatcagtatccaaaccctgaaaattctgatgatgagtag 489


>28718.m000038 DNA binding protein, putative
          Length = 390

 Score = 87.7 bits (44), Expect = 6e-17
 Identities = 134/164 (81%)
 Strand = Plus / Plus

                                                                       
Query: 106 ataaggatgaggaagtggggaaagtgggtcgctgaaattagagaacccaacaaacgttct 165
           ||||||||||| ||||||||||||||||| ||||| || |||||||| ||||| || || 
Sbjct: 85  ataaggatgagaaagtggggaaagtgggtggctgagataagagaaccgaacaagcggtca 144

                                                                       
Query: 166 agaatttggcttggctcttattctacccctatcgccgccgcgcgtgcatatgacaccgcc 225
           || |||||| | || |||||||| || ||| | || ||||| || || |||||||| || 
Sbjct: 145 aggatttggttaggttcttattcgactcctgttgcggccgctcgagcctatgacacggcg 204

                                                       
Query: 226 gttttctaccttagaggcccttccgctagacttaatttccccga 269
           ||||||||  | |||||||| || || || |||||||| |||||
Sbjct: 205 gttttctatttgagaggcccgtctgcaaggcttaattttcccga 248