Jatropha Genome Database
- JcCB0018201.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0018201.10 - phase: 0 /pseudo
(1047 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29620.m000548 Lipid-A-disaccharide synthase, putative 472 e-132
>29620.m000548 Lipid-A-disaccharide synthase, putative
Length = 1410
Score = 472 bits (238), Expect = e-132
Identities = 443/508 (87%), Gaps = 5/508 (0%)
Strand = Plus / Plus
Query: 15 tgatgtccaaggaaggattgaaatctctgtttcctatggaggatatagcagtaatgggga 74
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 254 tgatgtccaaggaaggattgaaatctctgttccctatggaggatattgcagtaatgggga 313
Query: 75 tatgggagttgttaccccatctgactcgaatcagagcaaagttgaaggaaacaactgagg 134
||||||| |||||||| ||| ||| | | | |||| || |||||| |||||||| ||||
Sbjct: 314 tatgggaattgttaccacatttgaataaatttagagaaaggttgaaagaaacaacagagg 373
Query: 135 ctgctcttct-gtttcggcctcatgttgttgtgactgtggactccaagggattctctttt 193
|||| ||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 374 ctgc-cttctcgtttctgcctcatgttgttgtgacagtggactccaagggattctctttt 432
Query: 194 cgtctcctaaagcagttgcgagctagatacagtcagcaacgatgggatgattgccctgta 253
||||| || |||||||| ||||||||||||||||||||| ||| | || | ||||||
Sbjct: 433 cgtctactgaagcagttacgagctagatacagtcagcaaagattgaatagt---cctgta 489
Query: 254 cacttccattatgtggcaccatcattttgggcatggaaagggggagaagcaaggctcaaa 313
|||||||||||||||||||| |||||||||||||||||||| ||||||| ||| ||||||
Sbjct: 490 cacttccattatgtggcaccgtcattttgggcatggaaaggaggagaagaaagactcaaa 549
Query: 314 gatctagctaattttgtggatcatgttttttgcatacttccaaatgaggaagcagtttgt 373
| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct: 550 aacctagctaattttgtggatcatgttttctgtatacttcctaatgaggaagcagtttgt 609
Query: 374 aagtcaaatggattggctgcaacctttgtgggccaccccattctggaagatgttttggaa 433
| | |||||||||| |||| || ||||||||||| || || |||||||| |||| ||
Sbjct: 610 agattaaatggattgactgctacgtttgtgggccatcctgttttggaagatcttttagag 669
Query: 434 ttgaattcaggaaagcaaatctcaccacatgaatgcaaaatagagggaaaccgtgaagat 493
|| |||| |||||||||| |||| |||||||||| ||||| ||| |||| ||||||||
Sbjct: 670 tttaatttgggaaagcaaaactcagcacatgaatggaaaatggagagaaatagtgaagat 729
Query: 494 ttccaaagtaaacatggagtaccttcag 521
|| | ||||||||||| ||| |||||||
Sbjct: 730 tttcgaagtaaacatgcagttccttcag 757
Score = 283 bits (143), Expect = 1e-75
Identities = 320/379 (84%)
Strand = Plus / Plus
Query: 571 aagtggcctgtgcctgctatagtggttcctggaggacatccacgcatgaaatatgatgca 630
||||||||||| ||| ||||| || ||||||||| | | || ||||||||||||||||
Sbjct: 931 aagtggcctgtaccttctatattgattcctggagcaattagacacatgaaatatgatgca 990
Query: 631 tttaatgccagtactgttgcattatgtacttctggaacagttgccgtggagcttcagctt 690
||| |||||||| ||||||||||||| || ||||| || || ||||| | ||| |
Sbjct: 991 cttagtgccagtagcattgcattatgtacatccggaaccgtggctttggagttgcagttg 1050
Query: 691 gcacgcttgccatgtgtagttgcctaccgagcccatctcctaactgaatcatttattcag 750
|||||||||||||||||||||||||| || |||||||||||||| |||| |||||| |
Sbjct: 1051 gcacgcttgccatgtgtagttgcctatcgtgcccatctcctaacagaatggattattcgg 1110
Query: 751 tacaaagcaaagataccatacatttctctgcccaatatactcatggattctgccataatt 810
|| ||||||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 1111 tataaagcaaagataccatacatttctctgcctaatatactcatggattcagctataatc 1170
Query: 811 cctgaagctctgtttcacgcatgcacacctacaaatctagcctcattgcttaaggaactc 870
|||||||| || ||||| |||||||| || | |||| ||||||||||||| |||||||
Sbjct: 1171 cctgaagccctttttcaagcatgcacgccaagaaatttagcctcattgctcttggaactc 1230
Query: 871 atgcacaacaaggaacttcaagaaaaacaaattgttgctgctgaaaaggtaatcagtctt 930
|| || ||| | |||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct: 1231 atacatgacacaggacttcaagaaaaacaaattgttgctgctaataaggtaatcagcctt 1290
Query: 931 ctatttccttcagaaagga 949
|| | ||||||||| ||||
Sbjct: 1291 ctgtatccttcagagagga 1309