Jatropha Genome Database

JcCB0017941.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0017941.20 - phase: 0 
         (348 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008847 50S ribosomal protein L18, putative                     325   1e-88

>30128.m008847 50S ribosomal protein L18, putative
          Length = 348

 Score =  325 bits (164), Expect = 1e-88
 Identities = 302/348 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggttattccacccccagttaagtggcctcctagagttacagaatatctgaaaccctat 60
           |||||||||||||| |||||||||||||| ||||||||| |||| | |||||||||||||
Sbjct: 1   atggttattccaccaccagttaagtggccacctagagttgcagattttctgaaaccctat 60

                                                                       
Query: 61  gttttgaagatgcatttcacaaacaagtatgtgagtgcccaagttatccactcaccaact 120
           ||  |||||||||| ||||| ||||||| ||| ||||||||||||||||||||||| | |
Sbjct: 61  gtcctgaagatgcacttcacgaacaagtttgttagtgcccaagttatccactcaccgagt 120

                                                                       
Query: 121 gcaacagttgcatgctctgcaagctcacaagaaaaggccctgagatcaagcatggaaaac 180
           || ||||| ||||| || |||||||||||||| |||||  ||||  ||||||||||||| 
Sbjct: 121 gctacagtggcatgttcagcaagctcacaagagaaggctttgaggccaagcatggaaaat 180

                                                                       
Query: 181 actcgagatgtagccgctgctgctaaaattgggaaaatattggcggagcgactgctggtc 240
           || || |||||||| ||||| || ||||||||||||||| |||  ||||| |||||||||
Sbjct: 181 acccgggatgtagcagctgcagccaaaattgggaaaatactgggagagcggctgctggtc 240

                                                                       
Query: 241 aaggacattcctgctgtttctgtcttcctcaagagagaacagaaatatcatgggaaagtt 300
           |||| ||| |||||| ||||||| ||||| ||||||||||||||||||||||| || || 
Sbjct: 241 aagggcatacctgctatttctgttttcctgaagagagaacagaaatatcatggaaaggtg 300

                                                           
Query: 301 aaagctgtcgttgatgctgttagagattctggtgtcaagcttctttaa 348
           |||||||| |||||| |||| ||||| ||||||||||| || ||||||
Sbjct: 301 aaagctgtggttgattctgtaagagaatctggtgtcaaactactttaa 348