Jatropha Genome Database

JcCB0017171.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0017171.20 + phase: 2 /pseudo/partial
         (554 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004476 Cyclic nucleotide-gated ion channel, putative           339   1e-92

>29848.m004476 Cyclic nucleotide-gated ion channel, putative
          Length = 1890

 Score =  339 bits (171), Expect = 1e-92
 Identities = 384/455 (84%)
 Strand = Plus / Plus

                                                                       
Query: 57  ctgaaggtggtgtaagtgatccaaaaacgggctataaaattccaaaatttggaaggttta 116
           |||||||  ||| ||||||||||||||| ||  ||||| |||| ||| ||||||||||||
Sbjct: 98  ctgaaggcagtgcaagtgatccaaaaacaggtcataaatttcctaaacttggaaggttta 157

                                                                       
Query: 117 aattattcccagaaaatcatgagtcacggagaaagcgaattcttgatccaggaagtgatg 176
           || |||||||||||||||| ||| || |||| ||||| |||||||||||||||| |||||
Sbjct: 158 aagtattcccagaaaatcacgagccatggaggaagcgtattcttgatccaggaactgatg 217

                                                                       
Query: 177 ttttcttgcaatggaacagggtcttcctcttctcttgcttggtagctctttttgttgatc 236
           |||  ||||| ||||||||||| ||||| ||||||||||||||||| ||||| |||||||
Sbjct: 218 tttatttgcagtggaacagggtattcctgttctcttgcttggtagcacttttcgttgatc 277

                                                                       
Query: 237 cattgttcttttatcttccaacagtgatacgccatggagctacttcctgcatgcacgttg 296
           ||||||| ||||| || ||| ||||   |  |   || | |||||| || ||| |   ||
Sbjct: 278 cattgtttttttacctaccatcagttgcaaacaggggtgttacttcttgtatggatactg 337

                                                                       
Query: 297 atttgaatttggggattactgtgacatgttttcgtacttttgctgatataatctatatat 356
           || |||||||||||||||| |||||||||||| | ||||| ||||||||| |||||||||
Sbjct: 338 atctgaatttggggattaccgtgacatgttttagaactttcgctgatatattctatatat 397

                                                                       
Query: 357 tgcatatcgtggtcaagtttagaacagcttatgtagctcccagttcaagagtttttggaa 416
           | ||| | ||||| ||||| || |||||||| ||||| |||||||||||||||||||| |
Sbjct: 398 tacatttagtggttaagttcaggacagcttacgtagcacccagttcaagagtttttggca 457

                                                                       
Query: 417 ggggtgaacttgttatggatctcgataaaattgctagacgttatttgaaatcagatttct 476
           | |||||||||||| |||||| | | |||||| |  | |||||||| |||||||||||||
Sbjct: 458 gaggtgaacttgttgtggatcccaagaaaatttcctggcgttatttcaaatcagatttct 517

                                              
Query: 477 tcatagaccttattgcagccctacctcttccacag 511
           |||| || |||||||||||| ||||||||||||||
Sbjct: 518 tcatcgatcttattgcagccttacctcttccacag 552