Jatropha Genome Database
- JcCB0017171.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0017171.10 + phase: 0 /TE
(615 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29848.m004475 arginine/serine-rich splicing factor, putative 470 e-132
28610.m000073 arginine/serine-rich splicing factor, putative 52 4e-06
>29848.m004475 arginine/serine-rich splicing factor, putative
Length = 540
Score = 470 bits (237), Expect = e-132
Identities = 351/389 (90%)
Strand = Plus / Plus
Query: 1 atgtctcgtgtgtatgttggtaatctggatgcccgtgttactgagcgggaacttgaagat 60
||||||||||| ||||| ||||| ||||| | || || |||||||| || |||||||||
Sbjct: 1 atgtctcgtgtctatgtgggtaacttggatcctcgagtcactgagcgtgatcttgaagat 60
Query: 61 gaatttcgtagatttggagtcataagaagtgtatgggttgcacggaggccaccaggctat 120
|| || || |||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct: 61 gagttccgcagatttggggtcataagaagtgtatgggttgcacgaagaccaccaggctat 120
Query: 121 gcattcattgactttgatgataaaagggatgcggaggatgcaattcatgaattagatggc 180
||||| |||||||| ||||||||||||||||| || |||||||| |||||||||||||||
Sbjct: 121 gcatttattgacttcgatgataaaagggatgcagatgatgcaatccatgaattagatggc 180
Query: 181 aagaatggttggagagttgagctttctcacaattccagaggtggtggtggccgcggtggg 240
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 181 aagaatggttggagagttgagctttctcacaattcaagaggtggtggaggccgtggtggt 240
Query: 241 ggtcgtggtcgttttggtggttctgacttgaagtgttatgagtgtggggaacctggtcat 300
|| |||||||| | ||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 241 ggccgtggtcgctctggtggttccgacttgaagtgttatgaatgtggggaacctggtcat 300
Query: 301 tttgcacgtgaatgccgcttacgtgttggtggtggaagacgacggagccgcagccccaga 360
||||| |||||||||||| ||||||||||| |||||| ||||| ||||||||||| |||
Sbjct: 301 tttgcccgtgaatgccgcctacgtgttggttctggaaggcgacgcagccgcagccctaga 360
Query: 361 tatcgcaggagtccaagctatggtcgaag 389
|||||||||||||| ||||||||||||||
Sbjct: 361 tatcgcaggagtcctagctatggtcgaag 389
Score = 127 bits (64), Expect = 8e-29
Identities = 103/116 (88%)
Strand = Plus / Plus
Query: 450 aggagctatagcccccgtggacgatcccccaaacgacgcagcgtttcaccccgtgggcgc 509
|||||||| ||||| ||||||||||| ||||| || |||||| ||||||| |||||||||
Sbjct: 388 aggagctacagcccgcgtggacgatctcccaagcgccgcagcatttcacctcgtgggcgc 447
Query: 510 agctacagcaggtcgcctccataccgtggtcgtgaggagctgccttatgccaatgg 565
|| || |||||||| || ||||||||||||||||| |||||||| |||||||||||
Sbjct: 448 agttatagcaggtcaccaccataccgtggtcgtgaagagctgccatatgccaatgg 503
>28610.m000073 arginine/serine-rich splicing factor, putative
Length = 555
Score = 52.0 bits (26), Expect = 4e-06
Identities = 58/68 (85%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 472 gatcccccaaacgacgcagcgtttcacc---ccgtgggcgcagctacagcaggtcgcctc 528
|||| |||| ||| |||||||| ||||| |||||| |||||||||||||| || ||||
Sbjct: 449 gatctcccagacgccgcagcgtctcacctcgccgtggtcgcagctacagcagatcccctc 508
Query: 529 cataccgt 536
||||||||
Sbjct: 509 cataccgt 516