Jatropha Genome Database

JcCB0014511.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0014511.20 - phase: 0 /pseudo/partial
         (558 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29851.m002421 vesicular-fusion protein nsf, putative                  137   8e-32

>29851.m002421 vesicular-fusion protein nsf, putative
          Length = 2106

 Score =  137 bits (69), Expect = 8e-32
 Identities = 126/145 (86%)
 Strand = Plus / Plus

                                                                        
Query: 45   aggtgtttgaggatgcatataagtcaccactaagcattatagtccttgacgatattgaga 104
            |||| ||||| || ||||| | ||||||||||||  ||||||| ||||| || |||||||
Sbjct: 1736 aggtttttgaagacgcatacaggtcaccactaagtgttatagttcttgatgacattgaga 1795

                                                                        
Query: 105  gactacttgagtatgttgccattggcccgcgcttttcaaacttgatttcccagacattgt 164
            |||| || ||||||||||| ||||| || ||||||||||| |||||||| ||||||||||
Sbjct: 1796 gacttctggagtatgttgctattgggccacgcttttcaaatttgatttctcagacattgt 1855

                                     
Query: 165  tggttctcctcaaacgcctccctcc 189
            |||||||||||||||| || |||||
Sbjct: 1856 tggttctcctcaaacgtcttcctcc 1880



 Score =  117 bits (59), Expect = 7e-26
 Identities = 110/127 (86%)
 Strand = Plus / Plus

                                                                        
Query: 227  agggaaagaaacttctggtgataggaaccacgagtgaagtcggctttttagattcaattg 286
            |||||||||||||  |||| ||||| || ||||||||||| |||||||||||||||||||
Sbjct: 1883 agggaaagaaactcttggtcataggcacaacgagtgaagttggctttttagattcaattg 1942

                                                                        
Query: 287  gcatttgcgattctttctctgtaacttaccatgttcccagattgaaggcagacgatgcaa 346
            || |||| ||| ||||||| || |||||| ||||||||| |||||||  ||| || ||||
Sbjct: 1943 gcctttgtgatgctttctccgttacttacaatgttcccaaattgaagaaagatgacgcaa 2002

                   
Query: 347  agaaggt 353
            |||||||
Sbjct: 2003 agaaggt 2009