Jatropha Genome Database

JcCB0013521.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0013521.10 - phase: 0 
         (498 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29852.m002017 conserved hypothetical protein                          178   2e-44

>29852.m002017 conserved hypothetical protein
          Length = 489

 Score =  178 bits (90), Expect = 2e-44
 Identities = 288/354 (81%)
 Strand = Plus / Plus

                                                                       
Query: 145 gtctttgcccttgtcctcctcacctactttatggtcgtctccgggatcgtctacgacgta 204
           ||||||||| | ||||| ||||||||||| |||||||| ||||| |||||||| ||||| 
Sbjct: 136 gtctttgccttcgtccttctcacctacttcatggtcgtttccggcatcgtctatgacgtc 195

                                                                       
Query: 205 attgtggagccgcctggaatcggatcgactcaagatccggcaaccggatctatccgacct 264
           || || ||||| ||||| |||||||| || ||||| ||  | ||||||||| ||||||| 
Sbjct: 196 atcgtcgagccccctggtatcggatctacccaagacccttctaccggatctgtccgaccc 255

                                                                       
Query: 265 gtcgtgtttctacctggtcgcgtgaacgggcaatacataattgagggcttgtcatctgga 324
           ||||| ||  |  ||||  | || || ||||| ||||||||||| || ||||| ||||| 
Sbjct: 256 gtcgtcttcttgtctggcagggtcaatgggcagtacataattgaagggttgtcttctggg 315

                                                                       
Query: 325 tttatgttcgtgcttggtggaactggaattgtgctaatggatcttgcattggacaagaat 384
           ||||||||  | |||||||||||||| ||| |||| |||||||||||  | || || |||
Sbjct: 316 tttatgtttcttcttggtggaactggtattatgcttatggatcttgctcttgataaaaat 375

                                                                       
Query: 385 cgagctaagagcgtaaaggtttcttatgcgactgctggtatttcgtcgttgattatcgca 444
           || |||||    || ||||||||||||||  ||||||| ||||| ||  |  |||| || 
Sbjct: 376 cgtgctaaatctgttaaggtttcttatgcttctgctgggatttcttccattgttattgct 435

                                                                 
Query: 445 tatgtgatgagtatgctctttattcgcattaagattcctggttatcttaggtga 498
           ||||| |||||||||||||||||||| |||||||| |||| |||||||||||||
Sbjct: 436 tatgttatgagtatgctctttattcgtattaagatccctgcttatcttaggtga 489