Jatropha Genome Database

JcCB0011561.50
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0011561.50 - phase: 0 /partial/short
         (144 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007163 Transcription factor HBP-1b(c1), putative               159   5e-39

>30131.m007163 Transcription factor HBP-1b(c1), putative
          Length = 1392

 Score =  159 bits (80), Expect = 5e-39
 Identities = 128/144 (88%)
 Strand = Plus / Plus

                                                                        
Query: 1    gctgataatctgcggcagcaaacgctacaacaaatgcaccgcatattgacaacccgccag 60
            ||||| ||| |||||||||| || ||||||||||||||||| |||||||||||||| || 
Sbjct: 1246 gctgacaatttgcggcagcagactctacaacaaatgcaccgaatattgacaacccggcaa 1305

                                                                        
Query: 61   tcagctcgtgctcttcttgctatccatgattacttttccagattacgtgctctcagttcc 120
            || |||||||| |||||||| || ||||||||||| ||||||||||| ||||| ||||||
Sbjct: 1306 tctgctcgtgcgcttcttgcaatacatgattacttctccagattacgcgctcttagttcc 1365

                                    
Query: 121  ctttggcttgctcgaccgagagag 144
            ||||||||||| ||||| ||||||
Sbjct: 1366 ctttggcttgcacgaccaagagag 1389