Jatropha Genome Database

JcCB0010841.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0010841.20 - phase: 0 /partial
         (543 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28644.m000930 Protein ABC1, mitochondrial precursor, putative         250   7e-66

>28644.m000930 Protein ABC1, mitochondrial precursor, putative
          Length = 2136

 Score =  250 bits (126), Expect = 7e-66
 Identities = 442/547 (80%), Gaps = 9/547 (1%)
 Strand = Plus / Plus

                                                                        
Query: 5    ttcgtgcccgcactgaaagggccttggttaaacggcaaatcgaagacactggttccagag 64
            |||||||||||||||||||||||||||||||| |||| |  |||||  | | ||||| ||
Sbjct: 1586 ttcgtgcccgcactgaaagggccttggttaaaaggcagacagaagatgccgtttccaaag 1645

                                                                        
Query: 65   ttgctatcaaggaaatactttccttcaccctaactgagaagggttcctttgtgaaggaga 124
            | ||||||||||| || |||||||||||  | |||||||||||| |||| |||| ||| |
Sbjct: 1646 tggctatcaaggagattctttccttcacattgactgagaagggtaccttcgtgagggaaa 1705

                                                                        
Query: 125  tacttcttcaagaagttgctaagggattggatgcacttgggctagctacacttgattttt 184
            ||||||||||||||||||| ||||| ||||||||||| ||  |||| |||||||||| ||
Sbjct: 1706 tacttcttcaagaagttgccaagggtttggatgcactaggtgtagcaacacttgattctt 1765

                                                                        
Query: 185  taacttccgcggcagccataagcataccctttgctgctccctcttcttcgtcttcaatga 244
            |||| || | |||  ||   |||||||||||| || |||||| ||| || ||||| ||||
Sbjct: 1766 taacatctgtggctaccgcgagcatacccttttctactcccttttcatcctcttcgatga 1825

                                                                        
Query: 245  ctgaggaagacataatgaacttgaggactttgcgtcgccttatgctactgttgtcaggtt 304
            |||||||||||||  ||||||| || || |||   |||||  | ||||||||||||||||
Sbjct: 1826 ctgaggaagacatggtgaacttaagaacgttgaagcgcctcgttctactgttgtcaggtt 1885

                                                                        
Query: 305  cccaaaagaatggcagttccattgaggaggttaaagg------gccgtacaggaatccga 358
            ||||||||||||| |||||    | ||| ||| ||||      | | |||| |   | ||
Sbjct: 1886 cccaaaagaatggtagttctgcagcggaagttcaagggagtaagacatacaaggtccaga 1945

                                                                        
Query: 359  atatattcttggaagaag---tatctgatttctatcaacttgaatcagttcaagatattc 415
            || ||| |||||||||||   || ||  ||| |||||||||  |||||||||||| ||||
Sbjct: 1946 atgtatacttggaagaagcattacctattttttatcaactttcatcagttcaagagattc 2005

                                                                        
Query: 416  tgcccgtgctttctgttattcctgagctcccaccacagctgcaacagcaggtgcttctgt 475
            ||||| | ||||||||||||||||||||||||| | | |||||||| ||| | |||||  
Sbjct: 2006 tgcccttcctttctgttattcctgagctcccactagaactgcaacaacagttacttctta 2065

                                                                        
Query: 476  tgccggctgatattgctggaaggttgatttcccgtgccactgctaggactatcaggagga 535
            |||| | |||| | |||||||||||  |||| |||||| | ||||||||  |||||||||
Sbjct: 2066 tgcccggtgatctggctggaaggttagtttctcgtgccgccgctaggacggtcaggagga 2125

                   
Query: 536  tgtttct 542
            |||||||
Sbjct: 2126 tgtttct 2132