Jatropha Genome Database

JcCB0009671.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0009671.10 + phase: 0 /pseudo/partial
         (348 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29634.m002088 ring finger protein, putative                           343   4e-94

>29634.m002088 ring finger protein, putative
          Length = 951

 Score =  343 bits (173), Expect = 4e-94
 Identities = 284/321 (88%)
 Strand = Plus / Plus

                                                                       
Query: 28  caggatgcatgggaggaggtcgatccagatgagctttcatatgaggagttgcttgcattg 87
           |||||||||||||| ||||| ||||||||||| ||||| |||||||| ||| ||||  | 
Sbjct: 628 caggatgcatgggaagaggttgatccagatgaactttcttatgaggaattgattgcgcta 687

                                                                       
Query: 88  ggtgaagttgttggaactgagagtagggggctttcagctgatacaattgcctctctgcct 147
           ||||||||||||||||  |||||||| |||||||| |||||||||||||||||| | || 
Sbjct: 688 ggtgaagttgttggaagcgagagtagagggctttctgctgatacaattgcctctttacca 747

                                                                       
Query: 148 tcagtaaacttcaaggcaggaagcagtcagaacggaagcaatgattcctgcgtcatatgt 207
            |||| ||||  ||||| |||||||||||||| ||||  ||||||||||| |||||||||
Sbjct: 748 acagtgaactataaggctggaagcagtcagaatggaactaatgattcctgtgtcatatgt 807

                                                                       
Query: 208 cgtttagattacgatgatggtgagaccctaacagtgctttcttgcaaacattcctaccat 267
           |||||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||
Sbjct: 808 cgtttagattacgaggatggtgagaccctgacactgctttcttgcaaacattcttaccat 867

                                                                       
Query: 268 tcagaatgcataaatgattggttgaaaataaacaaggtttgtcctgtctgcagcaaagag 327
           ||||| ||||||||| | |||||||||||||||||||||||||||||||||||||  |||
Sbjct: 868 tcagagtgcataaataactggttgaaaataaacaaggtttgtcctgtctgcagcaccgag 927

                                
Query: 328 gtctccagttcttgacacagc 348
           ||||||| |||  ||||||||
Sbjct: 928 gtctccacttccggacacagc 948