Jatropha Genome Database
- JcCB0009521.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0009521.20 + phase: 0 /pseudo
(1909 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
27810.m000635 DNA-damage-inducible protein f, putative 716 0.0
27810.m000670 pentatricopeptide repeat-containing protein, putative 64 3e-09
30147.m014512 pentatricopeptide repeat-containing protein, putative 60 5e-08
30032.m000454 pentatricopeptide repeat-containing protein, putative 58 2e-07
29693.m002080 pentatricopeptide repeat-containing protein, putative 58 2e-07
28838.m000257 Cell division protein ftsH, putative 56 8e-07
29807.m000488 pentatricopeptide repeat-containing protein, putative 54 3e-06
>27810.m000635 DNA-damage-inducible protein f, putative
Length = 2721
Score = 716 bits (361), Expect = 0.0
Identities = 781/921 (84%)
Strand = Plus / Plus
Query: 482 ggcctgatgatcatatattccctagtgctattaaagcatgtgcaattttgggtaggtgtg 541
|||||||||||||||| ||||| ||||||| |||||| || || ||| |||||||||||
Sbjct: 20 ggcctgatgatcatattttccccagtgctactaaagcttgcgccttttggggtaggtgtg 79
Query: 542 atattggtaaatccatacatgcatttgtggtcaaaactgggtttgatgttgatgtttttg 601
|| |||| ||||| |||||| |||||| | |||||||||| | || | |||| ||||
Sbjct: 80 atgttgggaaatcagtacatggttttgtgattaaaactgggtataatttcaatgtgtttg 139
Query: 602 ttgggagttctacagttgatatgtatggtaagtgtggggaaataaaaaatgcgaggaaag 661
||||||||||||| ||||| ||||| | || ||||||||| ||| ||||||||||||
Sbjct: 140 ttgggagttctacggttgacatgtacgcaaaatgtggggaattaagtgatgcgaggaaag 199
Query: 662 tgtttgatgaaatgcctgaaaggaatgtggtttcttggagtgggatgatttgtgcgtatg 721
| ||||||||||||||||| || |||||||||||||||||||||||||||| || ||||
Sbjct: 200 tatttgatgaaatgcctgagagaaatgtggtttcttggagtgggatgatttatggatatg 259
Query: 722 ctctattgggtgaagatgagaacgctttgaagctatttaaagaagctttattagaggatt 781
||| | |||||||||||||| | ||| | | || ||||||||||||||||| |||||
Sbjct: 260 ctcaagtgggtgaagatgaggaggctctaagactgtttaaagaagctttattggaggacc 319
Query: 782 tgagtgtgaatgattttactttttcgagtgttattagggtttgtggtaattcaacgttgc 841
| |||||||||||||| || |||||||||||||||||| |||||| |||| || ||||
Sbjct: 320 tagatgtgaatgattttatttattcgagtgttattagggtatgtggtgattcgactttgc 379
Query: 842 ttgaactagggaggcaaatacatggattgtgtttaaaaacaagttatgattcgtccagtt 901
||||| |||||||||| ||||| || |||||||| ||||||||||| ||||| || ||||
Sbjct: 380 ttgaattagggaggcagatacaaggtttgtgtttgaaaacaagttacgattcctcgagtt 439
Query: 902 ttgtgggaagttctttgatttctttgtattccaaatgtggtgttattgaagcagcttcta 961
||||||| ||||||||||||||||| ||||| | ||||||||| |||||||||| | ||
Sbjct: 440 ttgtgggtagttctttgatttctttctattcaaggtgtggtgttgttgaagcagcattta 499
Query: 962 gggtttttaatgaagcgcccattaggaatcttgggatgtggaattccatgttgattgctt 1021
||||||| |||| | | | |||| ||||||||| ||||||||| | |||||||||||||
Sbjct: 500 aggtttttgatgaggtgtctattaagaatcttggtatgtggaatgctatgttgattgctt 559
Query: 1022 gtgcccaacatgcacatacagaagaagtgtttaagttgtttgacagaatgaaaaatgttg 1081
|||| ||||||||||||||||| |||| ||| | |||||||||| |||||||||||||
Sbjct: 560 gtgctcaacatgcacatacagagaaagttttttatttgtttgacaagatgaaaaatgttg 619
Query: 1082 ggatgagaccaaattttattacctttttatgtttgctgtatgcttgtagtcatggagggt 1141
|||||| ||| ||||||||||||||||||||| |||| |||||||| ||||||| |||||
Sbjct: 620 ggatgaaacccaattttattacctttttatgtctgctttatgcttgcagtcatgcagggt 679
Query: 1142 taattgacaaaggccagcaatattttgggcttatgaaggattacggaattgagccgggag 1201
||||||| ||||| |||| ||||||| || ||||||||| || || || ||||| || |
Sbjct: 680 taattgaaaaaggacagcgttattttgagcgtatgaaggagtatgggatcgagccagggg 739
Query: 1202 ctcagcattatgctactatggtggacttgcttggtcgtgcagggaaattgcaggaagcac 1261
|||| |||||||| || |||||||| ||||||| ||||| ||||||||||| |||||||
Sbjct: 740 ctcaacattatgccaccttggtggacctgcttggccgtgcggggaaattgcaagaagcac 799
Query: 1262 ttgatattatcaaggcaatgcccatagaaccaacagaatcagtgtggggagcgtttttga 1321
||| ||||| |||| |||||||||||| |||||||| || || |||||||| ||| |||
Sbjct: 800 ttgcaattattaagggaatgcccatagatccaacagagtctgtttggggagcttttctga 859
Query: 1322 ctgggtgccgccttcatggggatgctgagttggcagcctttgctgctgatagaatctttg 1381
| ||||||||||||||||| | |||| | ||||||||||| ||||||||||||||||
Sbjct: 860 cagggtgccgccttcatggaaacactgaacttgcagcctttgcggctgatagaatctttg 919
Query: 1382 agttgggtcatgttagctcag 1402
||||||||| ||| |||||||
Sbjct: 920 agttgggtcctgtgagctcag 940
Score = 115 bits (58), Expect = 1e-24
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 1443 aagatatgaggatgctgccaaagccagaaagatgcttagggacagaggtgtaaaaaagga 1502
|||||||| ||||| |||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct: 948 aagatatggcgatgcagccaaagctagaaagatgcttagggaccgaggtgttaaaaagga 1007
Query: 1503 gacaggtttgagttggattgaggaag 1528
|||||| |||||||||||||||||||
Sbjct: 1008 gacaggattgagttggattgaggaag 1033
>27810.m000670 pentatricopeptide repeat-containing protein, putative
Length = 2457
Score = 63.9 bits (32), Expect = 3e-09
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 661 gtgtttgatgaaatgcctgaaaggaatgtggtttcttgga 700
||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 1594 gtgtttgatgaaatgtctgaaagaaatgtggtttcttgga 1633
>30147.m014512 pentatricopeptide repeat-containing protein, putative
Length = 1617
Score = 60.0 bits (30), Expect = 5e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 663 gtttgatgaaatgcctgaaaggaatgtggtttcttgga 700
|||||||||||||||||| |||||| ||||||||||||
Sbjct: 681 gtttgatgaaatgcctgagaggaatttggtttcttgga 718
>30032.m000454 pentatricopeptide repeat-containing protein, putative
Length = 1080
Score = 58.0 bits (29), Expect = 2e-07
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 655 aggaaagtgtttgatgaaatgcctgaaaggaatgtggtttc 695
||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 385 aggaaggtgtttgatgaaatgcctgagaggaatgttgtttc 425
>29693.m002080 pentatricopeptide repeat-containing protein, putative
Length = 1689
Score = 58.0 bits (29), Expect = 2e-07
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 664 tttgatgaaatgcctgaaaggaatgtggtttcttgga 700
|||||||||||||||||||| ||||| ||||||||||
Sbjct: 577 tttgatgaaatgcctgaaagaaatgttgtttcttgga 613
>28838.m000257 Cell division protein ftsH, putative
Length = 3474
Score = 56.0 bits (28), Expect = 8e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 661 gtgtttgatgaaatgcctgaaaggaatgtggtttcttgga 700
||||||||||||||||||||||| | ||||||||| ||||
Sbjct: 2461 gtgtttgatgaaatgcctgaaagaactgtggtttcatgga 2500
>29807.m000488 pentatricopeptide repeat-containing protein, putative
Length = 2052
Score = 54.0 bits (27), Expect = 3e-06
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 662 tgtttgatgaaatgcctgaaaggaatgtggtttcttggagtgggatgattt 712
||||||||||||||||||| || ||||| ||||||||| || ||||||||
Sbjct: 581 tgtttgatgaaatgcctgatagagatgtgatttcttggaatgtgatgattt 631