Jatropha Genome Database

JcCB0009521.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0009521.10 - phase: 1 /pseudo/partial
         (504 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27810.m000636 conserved hypothetical protein                          123   1e-27

>27810.m000636 conserved hypothetical protein
          Length = 3165

 Score =  123 bits (62), Expect = 1e-27
 Identities = 150/182 (82%)
 Strand = Plus / Plus

                                                                       
Query: 321 ttgaggagcaaagatttgaagcatggtgggcaagctttgatacttataaattggctcttt 380
           |||| ||| ||||| |||||||||||||||||||   |||||||  |||||||||| |||
Sbjct: 277 ttgatgagaaaagacttgaagcatggtgggcaaggaatgatactcgtaaattggctgttt 336

                                                                       
Query: 381 caagatgaannnnnnnnccaagctgttgttagaagtcttgctgatattattgacagaaaa 440
           |||||||||        ||||||||||| ||| ||||||| ||| || |||   ||||||
Sbjct: 337 caagatgaatttcttttccaagctgttgctaggagtcttggtgacataattctgagaaaa 396

                                                                       
Query: 441 gatgatcgttatatagctcttggttggtgtattcttatacgtggtcttgttgagtacgag 500
           |||||||||| ||||||||||| |||||||||| |||| ||| ||||||| ||||| |||
Sbjct: 397 gatgatcgttttatagctcttgcttggtgtatttttattcgtagtcttgtggagtatgag 456

             
Query: 501 ag 502
           ||
Sbjct: 457 ag 458



 Score = 67.9 bits (34), Expect = 5e-11
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                      
Query: 22 atatggaaatcggagtcatcagagtctccagaatcaatggtttctgttagattaggaaga 81
          ||||||||||| ||||||||||| |  ||||||||||||||||| || ||  |||| |||
Sbjct: 22 atatggaaatcagagtcatcagaattaccagaatcaatggtttcagtgagtataggcaga 81

                            
Query: 82 gccttaaccattctactt 99
          ||| |||||| |||||||
Sbjct: 82 gccataaccactctactt 99



 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 173 tctgcacaaattcgttaaagatgcagttgagagagaccac 212
           |||||| ||||| ||||||||||| |||||||||||||||
Sbjct: 198 tctgcataaatttgttaaagatgcggttgagagagaccac 237